| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,933,735 | A→G | G290G (GGT→GGC) | edd ← | phosphogluconate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,933,735 | 0 | A | G | 98.5% | 230.6 / ‑6.1 | 65 | G290G (GGT→GGC) | edd | phosphogluconate dehydratase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (31/33); total (31/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGCCATCAGCGGTACAACATCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATACCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGATGAA > NC_000913/1933603‑1933865 | tGCCATCAGCGGTACAACATCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTca > 1:756746/1‑140 (MQ=255)tGCCATCAGCGGTACAACATCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTca > 1:344390/1‑140 (MQ=255) gCCATCAGCGGTACAACATCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTcac < 1:1186481/140‑1 (MQ=255) ccATCAGCGGTACAACATCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTcacc > 1:333205/1‑140 (MQ=255) cGGTACAACATCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACtt > 2:1090326/1‑140 (MQ=255) tACAACATCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTtct > 1:716050/1‑140 (MQ=255) tACAACATCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTtct < 1:1189085/140‑1 (MQ=255) tACAACATCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTtct < 2:1092145/140‑1 (MQ=255) tACAACATCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTtct < 1:341205/140‑1 (MQ=255) caacaTCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCa > 1:1136982/1‑140 (MQ=255) caTCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCg < 1:84733/140‑1 (MQ=255) caTCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCg < 2:299327/140‑1 (MQ=255) gAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGatcat > 1:392781/1‑140 (MQ=255) gTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATc > 2:854713/1‑129 (MQ=255) gTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATc < 1:854713/129‑1 (MQ=255) tCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTAcc > 1:1228931/1‑140 (MQ=255) gagaAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGAt < 1:999880/140‑1 (MQ=255) aGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGc < 1:221514/140‑1 (MQ=255) aGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGc < 1:112065/140‑1 (MQ=255) gTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCa < 2:716050/140‑1 (MQ=255) tCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGTAACGATGCCGTTCACCACCACTTTCTCATCGat < 2:400588/122‑1 (MQ=255) tCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGTAACGATGCCGTTCACCACCACTTTCTCATCGat > 1:400588/1‑122 (MQ=255) tCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTAc < 2:217041/130‑1 (MQ=255) tCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTAc > 1:217041/1‑130 (MQ=255) tCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCAt < 2:1228931/140‑1 (MQ=255) tCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCAt < 1:224618/140‑1 (MQ=255) cATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATc < 2:1136982/140‑1 (MQ=255) cATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATc < 1:906046/140‑1 (MQ=255) tCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCca < 1:1149857/140‑1 (MQ=255) aGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCa < 2:1048569/132‑1 (MQ=255) aGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCa > 1:1048569/1‑132 (MQ=255) gTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCcattcat < 1:376256/140‑1 (MQ=255) tCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTcattacca > 2:670224/1‑140 (MQ=255) aTACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCattaccattacc > 1:962504/1‑140 (MQ=255) tACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCg > 2:524666/1‑140 (MQ=255) tACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGAGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCg > 2:1120531/1‑140 (MQ=255) ggCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTcattaccattac > 1:437604/1‑134 (MQ=255) ggCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTcattaccattac < 2:437604/134‑1 (MQ=255) ggCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCa < 1:403574/140‑1 (MQ=255) ggCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCa < 1:287741/140‑1 (MQ=255) gCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTcattacc > 2:932667/1‑128 (MQ=255) gCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTcattacc < 1:932667/128‑1 (MQ=255) gCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCAt > 2:402435/1‑140 (MQ=255) gCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCAt > 1:688921/1‑140 (MQ=255) gCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCAt > 2:862276/1‑140 (MQ=255) gCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGACATCCATTCATTACCATTACCGGTCAt > 1:588796/1‑140 (MQ=255) cccaGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACgcgc < 2:96126/139‑1 (MQ=255) caGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGACATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAg < 2:588796/140‑1 (MQ=255) gCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTgcg < 1:162806/140‑1 (MQ=255) cATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTgcgg < 2:333205/140‑1 (MQ=255) aTGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTgcggc < 1:336996/140‑1 (MQ=255) tGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATcg > 1:34298/1‑140 (MQ=255) tGGAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATcg > 1:630061/1‑140 (MQ=255) ggAACCACCGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATcgc > 1:267953/1‑140 (MQ=255) ccaccGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCCAAGCATCgcgccg > 1:1006859/1‑138 (MQ=255) ccaccGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAg > 2:290942/1‑140 (MQ=255) accGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCg < 1:1120531/140‑1 (MQ=255) accGGTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCg < 1:524666/140‑1 (MQ=255) gTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCaaa > 2:553365/1‑123 (MQ=255) gTCGCCAGCAGTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCaaa < 1:553365/123‑1 (MQ=255) gcagTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGa < 1:290942/140‑1 (MQ=255) gcagTGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGa < 2:962504/140‑1 (MQ=255) agTGCAACGATACCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGCTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGATg < 2:1147352/140‑1 (MQ=255) tGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGATGaa > 2:444877/1‑140 (MQ=255) tGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGATGaa > 2:939409/1‑140 (MQ=255) tGCAACGATGCCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCAACGCGCAGCGCGGAGACCGGGTGaa > 2:757993/1‑140 (MQ=255) | TGCCATCAGCGGTACAACATCAGAAAGGTCAGAGAAGTCATCCCAGTTAATCTGAATACCGGCCGCGCGCGCCATCGCCACCAGGTGCATGGTGTGGTTAGTGGAACCACCGGTCGCCAGCAGTGCAACGATACCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGATGAA > NC_000913/1933603‑1933865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |