BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,778,930	(C)_6→5	coding (3797/4581 nt)	ypjA ←	adhesin‑like autotransporter YpjA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,778,925	0	C	.	100.0%	377.5 / NA	89	coding (3802/4581 nt)	ypjA	adhesin‑like autotransporter YpjA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (41/48); total (41/48)

Only 100 of 103 total aligned reads displayed.

TAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCG  >  NC_000913/2778786‑2779060

tAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGc                                                                                                                                         >  2:734955/1‑140 (MQ=255)

 aGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGcc                                                                                                                                        <  1:1458197/140‑1 (MQ=255)

  gCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGccc                                                                                                                                       >  1:1011381/1‑140 (MQ=255)

  gCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGccc                                                                                                                                       <  1:133990/140‑1 (MQ=255)

  gCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGccc                                                                                                                                       <  1:664696/140‑1 (MQ=255)

   cccATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGcccc                                                                                                                                      >  1:557740/1‑140 (MQ=255)

    ccATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGccccc                                                                                                                                     <  2:719069/140‑1 (MQ=255)

     cATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGccccca                                                                                                                                    <  2:1026989/140‑2 (MQ=255)

       tAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGcccccaga                                                                                                                                  >  1:843929/1‑137 (MQ=255)

       tAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGcccccaga                                                                                                                                  >  1:1172086/1‑137 (MQ=255)

       tAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGcccccaga                                                                                                                                  <  2:906688/140‑4 (MQ=255)

        aaaaGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGcccccagac                                                                                                                                 >  2:737836/1‑136 (MQ=255)

          aaGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACat                                                                                                                              <  2:479090/140‑1 (MQ=255)

             cgcCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACattat                                                                                                                           >  1:341076/1‑140 (MQ=255)

               ccTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTAttg                                                                                                                         <  2:1172086/140‑1 (MQ=255)

               ccTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTAttg                                                                                                                         <  1:222668/140‑1 (MQ=255)

               ccTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTAttg                                                                                                                         <  1:734955/140‑1 (MQ=255)

                        gTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGa                                                                                                                <  1:737836/140‑1 (MQ=255)

                          aaTTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACt                                                                                                              <  2:341076/140‑1 (MQ=255)

                          aaTTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACt                                                                                                              <  1:1063002/140‑1 (MQ=255)

                          aaTTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACt                                                                                                              <  2:595934/140‑1 (MQ=255)

                              ccTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTAttg                                                                                                                         >  1:181115/1‑125 (MQ=255)

                              ccTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTAttg                                                                                                                         <  2:284779/125‑1 (MQ=255)

                              ccTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTAttg                                                                                                                         >  1:284779/1‑125 (MQ=255)

                              ccTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTAttg                                                                                                                         <  2:181115/125‑1 (MQ=255)

                              ccTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCt                                                                                                          <  2:512228/140‑1 (MQ=255)

                              ccTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCt                                                                                                          >  2:294325/1‑140 (MQ=255)

                                ttCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCttt                                                                                                        >  2:255362/1‑140 (MQ=255)

                                  cAGGAATATCATTGCGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCTCCCGCATCGGTGGTGACATTATTACGGGTCTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCa                                                                                                      <  2:687322/140‑1 (MQ=255)

                                  cAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCa                                                                                                      <  1:255362/140‑1 (MQ=255)

                                   aGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCAt                                                                                                     >  2:726416/1‑140 (MQ=255)

                                             ttACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTTTGGACTCGCTTTCATTATGTTCAAc                                                                                           >  1:400841/1‑140 (MQ=255)

                                               aCGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCg                                                                                         >  1:1409748/1‑140 (MQ=255)

                                               aCGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCg                                                                                         >  1:17222/1‑140 (MQ=255)

                                               aCGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCg                                                                                         <  1:1296767/140‑1 (MQ=255)

                                                 ggCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCt                                                                                       <  2:1409748/140‑1 (MQ=255)

                                                  gCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTc                                                                                      <  2:1011381/140‑1 (MQ=255)

                                                   cTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGAGACATTATTACGGGTGTGATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTcg                                                                                     >  2:1320957/1‑140 (MQ=255)

                                                     gTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTcgcg                                                                                   >  2:124766/1‑140 (MQ=255)

                                                      tCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGa                                                                                  >  1:852395/1‑140 (MQ=255)

                                                       cGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGaa                                                                                 <  2:17222/140‑1 (MQ=255)

                                                        gATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAAt                                                                                >  2:968588/1‑140 (MQ=255)

                                                         aTCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATa                                                                               <  2:920043/140‑1 (MQ=255)

                                                             ccACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGt                                                                           >  1:1154853/1‑140 (MQ=255)

                                                                cTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTa                                                                        >  2:451267/1‑140 (MQ=255)

                                                                   tCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATa                                                                               <  2:1309904/130‑1 (MQ=255)

                                                                   tCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATa                                                                               >  1:1309904/1‑130 (MQ=255)

                                                                     aTTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCa                                                                   <  1:968588/140‑1 (MQ=255)

                                                                      ttCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATa                                                                               <  1:70844/127‑1 (MQ=255)

                                                                      ttCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATa                                                                               >  2:70844/1‑127 (MQ=255)

                                                                          ggTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATc                                                              >  1:1099672/1‑140 (MQ=255)

                                                                           gtaaGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCa                                                             >  2:1363390/4‑140 (MQ=255)

                                                                           gTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGtt                                                                          >  2:34213/1‑127 (MQ=255)

                                                                           gTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGtt                                                                          <  1:34213/127‑1 (MQ=255)

                                                                           gTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCa                                                             >  1:898453/1‑140 (MQ=255)

                                                                           gTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCa                                                             >  1:1308877/1‑140 (MQ=255)

                                                                               gCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGGGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATa                                                         >  2:1479261/1‑140 (MQ=255)

                                                                                cGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATAc                                                        >  1:202057/1‑140 (MQ=255)

                                                                                 gTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATAcc                                                       <  2:843929/140‑1 (MQ=255)

                                                                                   cTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCaa                                                     <  2:898453/140‑1 (MQ=255)

                                                                                    tGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAAc                                                    <  2:202057/140‑1 (MQ=255)

                                                                                     gCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACg                                                   >  1:651960/1‑140 (MQ=255)

                                                                                      cTCAGACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACgg                                                  >  1:44236/1‑140 (MQ=255)

                                                                                            cccGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGt                                            <  1:986533/140‑1 (MQ=255)

                                                                                              cGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTtg                                          <  1:1111433/140‑1 (MQ=255)

                                                                                              cGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTtg                                          <  1:294325/140‑1 (MQ=255)

                                                                                                 cACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTtgctg                                       <  1:1320957/140‑1 (MQ=255)

                                                                                                 cACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTtgctg                                       <  2:954504/140‑1 (MQ=255)

                                                                                                 cACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTtgct                                        <  1:142971/139‑1 (MQ=255)

                                                                                                 cACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTtgct                                        >  2:142971/1‑139 (MQ=255)

                                                                                                 cACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTAAGCTCAGCATCAAATACCAACGGTAATGTtgctg                                       <  2:1308877/140‑1 (MQ=255)

                                                                                                 cACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTGCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTtgctg                                       <  1:1291949/140‑1 (MQ=255)

                                                                                                   cccGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGcc                                     <  2:1099672/140‑1 (MQ=255)

                                                                                                   cccGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGcc                                     <  2:651960/140‑1 (MQ=255)

                                                                                                     cGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGcc                                     <  2:965635/138‑1 (MQ=255)

                                                                                                     cGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGcc                                     >  1:965635/1‑138 (MQ=255)

                                                                                                     cGCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCat                                   >  1:319461/1‑140 (MQ=255)

                                                                                                      gCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTTTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCata                                  <  2:400841/140‑1 (MQ=255)

                                                                                                      gCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTtg                                          <  1:143806/132‑1 (MQ=255)

                                                                                                      gCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCata                                  <  1:451267/140‑1 (MQ=255)

                                                                                                      gCATCGGTGGTGACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCata                                  <  1:1363390/140‑1 (MQ=255)

                                                                                                              ggtgACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTAc                          >  1:785044/1‑140 (MQ=255)

                                                                                                                tgACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACgg                        <  2:852395/140‑1 (MQ=255)

                                                                                                                tgACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACgg                        <  1:124766/140‑1 (MQ=255)

                                                                                                                tgACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACgg                        <  2:981615/140‑1 (MQ=255)

                                                                                                                tgACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACgg                        <  2:382271/140‑1 (MQ=255)

                                                                                                                tgACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACgg                        <  1:726416/140‑1 (MQ=255)

                                                                                                                tgACATTATTACGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACgg                        <  2:319461/140‑1 (MQ=255)

                                                                                                                     ttattaCGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGcc                   >  1:1172296/1‑140 (MQ=255)

                                                                                                                       attaCGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGt                 <  1:270873/140‑1 (MQ=255)

                                                                                                                       attaCGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGt                 >  1:1278346/1‑140 (MQ=255)

                                                                                                                         taCGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACgg                        >  1:122660/1‑131 (MQ=255)

                                                                                                                         taCGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACgg                        <  2:122660/131‑1 (MQ=255)

                                                                                                                          aCGGGTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGa              <  2:1154058/140‑1 (MQ=255)

                                                                                                                             ggTGTTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAgg           >  1:1204671/1‑140 (MQ=255)

                                                                                                                              gtgtTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGc          >  2:712274/1‑140 (MQ=255)

                                                                                                                              gtgtTATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGc          >  1:112065/1‑140 (MQ=255)

                                                                                                                                 ttATACGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTC‑ACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTaa      >  2:1323131/1‑140 (MQ=255)

                                                                                                                                  tataCGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTaa      <  2:1172296/140‑1 (MQ=255)

                                                                                                                                      cGTCG‑CCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCg  >  2:1343817/1‑140 (MQ=255)

TAGCCCATAAAAGCGCCTAGCGTGGTAATTCCTTCAGGAATATCATTACGGCTGTCGATCCCCACTGTCATTCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAGTACGGCTGCCGTAGAAGGCGTAATGCG  >  NC_000913/2778786‑2779060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`