BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,880,579	(A)_7→8	coding (470/675 nt)	casD ←	type I‑E CRISPR system Cascade subunit CasD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,880,572	1	.	A	100.0%	352.8 / NA	99	L159F (TTG→TTT)	casD	type I‑E CRISPR system Cascade subunit CasD
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (52/47); total (52/47)

Only 100 of 115 total aligned reads displayed.

TGATCATCGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCC‑AAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGG  >  NC_000913/2880442‑2880705

 gATCATCGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCC‑aaaaaaaagc                                                                                                                             <  1:1226132/140‑4 (MQ=255)

   tcatcGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCC‑aaaaaaaagcgg                                                                                                                           <  1:1391453/140‑6 (MQ=255)

   tcatcGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCC‑aaaaaaaagcgg                                                                                                                           <  2:1459313/140‑6 (MQ=255)

    catcGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCC‑aaaaaaaagcgg                                                                                                                           >  1:1406397/1‑134 (MQ=255)

    catcGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCC‑aaaaaaaagcgg                                                                                                                           <  2:1406397/139‑6 (MQ=255)

    catcGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATACATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCggg                                                                                                                           >  2:1018277/1‑140 (MQ=255)

        ggTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGgtg                                                                                                                         <  2:562509/138‑1 (MQ=255)

        ggTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGgtg                                                                                                                         >  1:562509/1‑138 (MQ=255)

          ttCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGtt                                                                                                                     >  1:1010364/1‑140 (MQ=255)

            cgtcgCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCC‑aaaaaaaagc                                                                                                                             >  2:788137/1‑126 (MQ=255)

            cgtcgCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCC‑aaaaaaaagc                                                                                                                             <  1:788137/129‑4 (MQ=255)

             gtcgCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGt                                                                                                                  >  2:1428101/1‑140 (MQ=255)

              tcgCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTg                                                                                                                 >  1:1372565/1‑140 (MQ=255)

               cgcgcgCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTgg                                                                                                                >  1:655915/1‑140 (MQ=255)

               cgcgcgCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCC‑aaaaaaaagc                                                                                                                             <  1:682928/126‑4 (MQ=255)

                 cgcgcCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGc                                                                                                              >  2:1132962/1‑140 (MQ=255)

                 cgcgcCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATACATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGc                                                                                                              <  1:1018277/140‑1 (MQ=255)

                   cgcCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCaa                                                                                                            <  2:388967/140‑1 (MQ=255)

                    gcCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCATCGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAAc                                                                                                           >  2:950513/1‑140 (MQ=255)

                        tAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTtct                                                                                                       >  2:146218/1‑140 (MQ=255)

                        tAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTtct                                                                                                       <  2:655915/140‑1 (MQ=255)

                        tAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTtct                                                                                                       >  1:1277935/1‑140 (MQ=255)

                         aaaTTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTtctc                                                                                                      <  1:373890/140‑1 (MQ=255)

                            ttttAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGc                                                                                                   <  2:814096/140‑1 (MQ=255)

                                aaaTGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCa                                                                                               >  2:1460734/1‑140 (MQ=255)

                                   tgatgCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGt                                                                                            <  1:1126276/140‑1 (MQ=255)

                                   tgatgCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGt                                                                                            <  1:1428101/140‑1 (MQ=255)

                                   tgatgCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGt                                                                                            <  2:101487/140‑1 (MQ=255)

                                   tgatgCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGt                                                                                            <  2:88956/140‑1 (MQ=255)

                                      tgCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAg                                                                                         <  1:1038358/140‑1 (MQ=255)

                                       gCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGc                                                                                                   <  2:1170205/129‑1 (MQ=255)

                                       gCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGc                                                                                                   >  1:1170205/1‑129 (MQ=255)

                                               aCTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATACGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATAcc                                                                                <  2:1142845/140‑1 (MQ=255)

                                                 tGATTCCTCACTATCTATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGa                                                                              <  2:1278910/140‑1 (MQ=255)

                                                 tGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGa                                                                              <  1:1090186/140‑1 (MQ=255)

                                                 tGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGa                                                                              <  2:723531/140‑1 (MQ=255)

                                                   aTTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGt                                                                                            >  2:7545/1‑124 (MQ=255)

                                                    ttCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGc                                                                           <  2:1182632/140‑1 (MQ=255)

                                                     tCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGt                                                                                            >  2:1214539/1‑122 (MQ=255)

                                                     tCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGt                                                                                            <  1:1214539/122‑1 (MQ=255)

                                                      ccTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCtt                                                                         <  2:894495/140‑1 (MQ=255)

                                                       cTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCttt                                                                        >  2:915526/1‑140 (MQ=255)

                                                         cACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTaa                                                                      >  2:287487/1‑140 (MQ=255)

                                                             atatatatCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACt                                                                  >  1:413257/1‑140 (MQ=255)

                                                             atatatatCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACt                                                                  <  2:1372565/140‑1 (MQ=255)

                                                                 atatCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCt                                                               <  1:853760/139‑1 (MQ=255)

                                                                 atatCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCt                                                               >  2:853760/1‑139 (MQ=255)

                                                                    tCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCttttt                                                           >  2:499105/1‑140 (MQ=255)

                                                                      gccgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTc                                                          <  1:315290/139‑1 (MQ=255)

                                                                      gccgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCa                                                         >  1:1227361/1‑140 (MQ=255)

                                                                      gccgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCa                                                         >  1:217904/1‑140 (MQ=255)

                                                                      gccgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCa                                                         >  2:1338564/1‑140 (MQ=255)

                                                                      gccgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCa                                                         >  1:380640/1‑140 (MQ=255)

                                                                      gccgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCa                                                         >  1:686013/1‑140 (MQ=255)

                                                                       ccgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCaa                                                        >  2:1099847/1‑140 (MQ=255)

                                                                        cgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACt                                                                  >  2:1060904/1‑129 (MQ=255)

                                                                        cgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACt                                                                  <  1:1060904/129‑1 (MQ=255)

                                                                        cgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAg                                                       >  1:1202899/1‑140 (MQ=255)

                                                                        cgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAg                                                       >  2:377354/1‑140 (MQ=255)

                                                                        cgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAg                                                       >  2:808323/1‑140 (MQ=255)

                                                                        cgccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAg                                                       >  2:944963/1‑140 (MQ=255)

                                                                         gccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGt                                                      <  2:1083222/140‑1 (MQ=255)

                                                                         gccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGt                                                      <  2:188403/140‑1 (MQ=255)

                                                                          ccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGtt                                                     <  2:413257/140‑1 (MQ=255)

                                                                          ccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGtt                                                     >  2:519854/1‑140 (MQ=255)

                                                                          ccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGtt                                                     >  2:658116/1‑140 (MQ=255)

                                                                          ccAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGtt                                                     >  2:1400833/1‑140 (MQ=255)

                                                                                    cATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAAc                                           <  2:686013/140‑1 (MQ=255)

                                                                                      tAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCa                                         <  1:287487/140‑1 (MQ=255)

                                                                                        aTTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATc                                       <  2:1227361/140‑1 (MQ=255)

                                                                                               aGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCAt                                <  1:1338564/140‑1 (MQ=255)

                                                                                                gcgcCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATg                               <  1:519854/140‑1 (MQ=255)

                                                                                                gcgcCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATg                               <  1:808323/140‑1 (MQ=255)

                                                                                                 cgcCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATgg                              >  1:551431/1‑140 (MQ=255)

                                                                                                 cgcCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATgg                              >  2:412713/1‑140 (MQ=255)

                                                                                                 cgcCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATg                               <  2:1246524/139‑1 (MQ=255)

                                                                                                 cgcCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGAATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATg                               >  1:1246524/1‑139 (MQ=255)

                                                                                                  gcCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATggg                             <  1:377354/140‑1 (MQ=255)

                                                                                                  gcCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATggg                             <  2:380640/140‑1 (MQ=255)

                                                                                                  gcCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATggg                             <  1:146218/140‑1 (MQ=255)

                                                                                                  gcCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATggg                             <  1:850355/140‑1 (MQ=255)

                                                                                                   ccTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCAt                                >  2:528322/1‑136 (MQ=255)

                                                                                                   ccTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATgggg                            >  1:874728/1‑140 (MQ=255)

                                                                                                   ccTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATgggg                            >  2:357290/1‑140 (MQ=255)

                                                                                                    cTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGgt                           <  1:755056/140‑1 (MQ=255)

                                                                                                    cTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGgt                           <  2:217904/140‑1 (MQ=255)

                                                                                                       cTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGCAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGtt                        >  1:1200845/1‑140 (MQ=255)

                                                                                                         gAGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTaa                      <  1:1099847/140‑1 (MQ=255)

                                                                                                          aGGATCCGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGCAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAAc                     <  2:1200845/140‑1 (MQ=255)

                                                                                                               ccGATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCagag                >  1:154916/1‑140 (MQ=255)

                                                                                                                 gATGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCagagag              <  1:658116/140‑1 (MQ=255)

                                                                                                                  aTGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTaa                      <  1:780016/131‑1 (MQ=255)

                                                                                                                  aTGCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTaa                      >  2:780016/1‑131 (MQ=255)

                                                                                                                    gCCTGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGa           <  1:1454129/140‑1 (MQ=255)

                                                                                                                       tGACATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACgg        >  2:616486/1‑140 (MQ=255)

                                                                                                                         aCATGTCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTa      >  1:439384/1‑140 (MQ=255)

                                                                                                                         aCATGTCCCCAAAAAAAAGCGGGTGTGATAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTa      >  1:253064/1‑140 (MQ=255)

                                                                                                                             tcccca‑AAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCg            <  1:191062/127‑1 (MQ=255)

                                                                                                                             tcccca‑AAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAagg  >  1:963553/3‑139 (MQ=255)

                                                                                                                              tCCCCAAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCg            >  2:191062/1‑129 (MQ=255)

TGATCATCGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCC‑AAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGG  >  NC_000913/2880442‑2880705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`