BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,766,360	A→G	D148G (GAC→GGC)	rnlA →	CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,766,360	0	A	G	100.0%	364.0 / NA	103	D148G (GAC→GGC)	rnlA	CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (55/48); total (55/48)

Only 100 of 105 total aligned reads displayed.

TACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGAAAGTGCTAA  >  NC_000913/2766225‑2766491

tACTGCAAGGATTTGTAGAGACACCCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGaa                                                                                                                                 >  1:724553/1‑140 (MQ=255)

tACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGaa                                                                                                                                 >  1:1058545/1‑140 (MQ=255)

tACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGaa                                                                                                                                 >  2:1382219/1‑140 (MQ=255)

tACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGaa                                                                                                                                 >  2:286698/1‑140 (MQ=255)

tACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGaa                                                                                                                                 >  2:303857/1‑140 (MQ=255)

   tGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTg                                                                                                                              >  2:140490/1‑140 (MQ=255)

     cAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCATGGCGAATTGAc                                                                                                                            >  2:1468943/1‑140 (MQ=255)

       aGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACtg                                                                                                                          <  2:916883/140‑1 (MQ=255)

       aGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACtg                                                                                                                          >  1:916883/1‑140 (MQ=255)

       aGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACtg                                                                                                                          <  1:1354231/140‑1 (MQ=255)

          aTTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGa                                                                                                                       <  2:726710/140‑1 (MQ=255)

          aTTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGa                                                                                                                       <  1:286698/140‑1 (MQ=255)

          aTTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGa                                                                                                                       >  1:431694/1‑140 (MQ=255)

          aTTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGa                                                                                                                       >  2:1325618/1‑140 (MQ=255)

            ttGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACTAGCTATCAGGGCGAATTGACTGTGAGc                                                                                                                     <  1:1294486/140‑1 (MQ=255)

            ttGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCATGGCGAATTGACTGTGAGc                                                                                                                     <  1:1468943/140‑1 (MQ=255)

            ttGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGc                                                                                                                     <  1:1348182/140‑1 (MQ=255)

            ttGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGc                                                                                                                     <  1:909082/140‑1 (MQ=255)

            ttGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGc                                                                                                                     <  1:585498/140‑1 (MQ=255)

            ttGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGc                                                                                                                     <  2:1383921/140‑1 (MQ=255)

            ttGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGc                                                                                                                     <  1:301420/140‑1 (MQ=255)

            ttGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGc                                                                                                                     <  2:431694/140‑1 (MQ=255)

               tAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTg                                                                                                                  <  1:303857/140‑1 (MQ=255)

                    aCAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTg                                                                                                                  >  1:843911/1‑135 (MQ=255)

                    aCAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTg                                                                                                                  <  2:843911/135‑1 (MQ=255)

                    aCAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCatat                                                                                                             >  1:14973/1‑140 (MQ=255)

                    aCAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCatat                                                                                                             <  1:806826/140‑1 (MQ=255)

                    aCAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCACGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCatat                                                                                                             >  2:1300143/1‑140 (MQ=255)

                         cGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCacaa                                                                                                        >  2:62639/1‑140 (MQ=255)

                         cGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTAACAGGGCGAATTGACTATGAGCCTGCATATCacaa                                                                                                        >  1:1181146/1‑140 (MQ=255)

                          gTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCacaac                                                                                                       <  1:140490/140‑1 (MQ=255)

                              tACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGt                                                                                                   >  1:979489/1‑140 (MQ=255)

                               aCCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTa                                                                                                  <  2:14973/140‑1 (MQ=255)

                                   gTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGt                                                                                                   >  2:583608/1‑135 (MQ=255)

                                   gTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGt                                                                                                   <  1:583608/135‑1 (MQ=255)

                                    tACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTc                                                                                             >  1:774138/1‑140 (MQ=255)

                                     aCTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTcc                                                                                            <  2:681632/140‑1 (MQ=255)

                                     aCTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTcc                                                                                            >  1:1382302/1‑140 (MQ=255)

                                     aCTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTcc                                                                                            <  1:1382219/140‑1 (MQ=255)

                                     aCTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTcc                                                                                            <  1:706626/140‑1 (MQ=255)

                                      cTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCa                                                                                           >  2:367057/1‑140 (MQ=255)

                                        tGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTGTTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGa                                                                                         >  1:872703/1‑140 (MQ=255)

                                          aGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCacaa                                                                                                        >  1:498061/1‑123 (MQ=255)

                                          aGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCacaa                                                                                                        <  2:498061/123‑1 (MQ=255)

                                          aGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGAtt                                                                                       >  2:929961/1‑140 (MQ=255)

                                          aGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGAtt                                                                                       >  1:1058775/1‑140 (MQ=255)

                                          aGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGAtt                                                                                       >  2:1160596/1‑140 (MQ=255)

                                          aGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGAtt                                                                                       >  2:14395/1‑140 (MQ=255)

                                          aGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGAt                                                                                        >  2:1392846/1‑139 (MQ=255)

                                          aGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGAt                                                                                        <  1:1392846/139‑1 (MQ=255)

                                            cTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCa                                                                                     >  1:808826/1‑140 (MQ=255)

                                               tCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAggg                                                                                  <  2:808826/140‑1 (MQ=255)

                                                 agcagATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGcc                                                                                >  1:666865/1‑140 (MQ=255)

                                                 agcagATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGcc                                                                                <  2:666865/140‑1 (MQ=255)

                                                       tGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGc                                                                          <  1:14395/140‑1 (MQ=255)

                                                                   agagTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGAc                                                                             >  1:883185/1‑125 (MQ=255)

                                                                   agagTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGAc                                                                             <  2:883185/125‑1 (MQ=255)

                                                                   agagTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCg                                                                           <  1:1321400/127‑1 (MQ=255)

                                                                   agagTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCg                                                                           >  2:1321400/1‑127 (MQ=255)

                                                                     agTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACa                                                              >  2:1004153/1‑138 (MQ=255)

                                                                     agTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACa                                                              <  1:1004153/138‑1 (MQ=255)

                                                                      gTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACagag                                                           <  1:367057/140‑1 (MQ=255)

                                                                       ttCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGt                                                          >  1:751709/1‑140 (MQ=255)

                                                                         cAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGttt                                                        >  2:680049/1‑140 (MQ=255)

                                                                            agaACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCa                                                     >  1:747642/1‑140 (MQ=255)

                                                                            agaACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCa                                                     >  2:1133387/1‑140 (MQ=255)

                                                                              aaCACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACg                                                   <  1:929961/140‑1 (MQ=255)

                                                                              aaCACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACg                                                   <  1:245549/140‑1 (MQ=255)

                                                                               acacTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGt                                                  >  2:1116215/1‑140 (MQ=255)

                                                                               acacTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGt                                                  >  1:946983/1‑140 (MQ=255)

                                                                                 acTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGttt                                                <  1:62639/140‑1 (MQ=255)

                                                                                   tctcGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTaa                                              >  1:1432589/1‑140 (MQ=255)

                                                                                      cGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCGCAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACtt                                           >  2:1414658/1‑140 (MQ=255)

                                                                                          aCGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCa                                       >  2:1245052/1‑140 (MQ=255)

                                                                                             cTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGcc                                    <  1:1325618/140‑1 (MQ=255)

                                                                                             cTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGcc                                    >  2:1040631/1‑140 (MQ=255)

                                                                                             cTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGcc                                    >  2:522657/1‑140 (MQ=255)

                                                                                             cTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGcc                                    >  1:812329/1‑140 (MQ=255)

                                                                                             cTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGcc                                    <  1:1116215/140‑1 (MQ=255)

                                                                                                 tACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGc                                <  1:772304/140‑1 (MQ=255)

                                                                                                      tAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTgg                                         >  2:109339/1‑126 (MQ=255)

                                                                                                      tAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTgg                                         <  1:109339/126‑1 (MQ=255)

                                                                                                      tAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGAt                           >  1:1440959/1‑140 (MQ=255)

                                                                                                      tAGTGTGGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGAt                           >  1:1106641/1‑140 (MQ=255)

                                                                                                          gtgGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTAc                       >  1:1407861/1‑140 (MQ=255)

                                                                                                           tgGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACa                      >  1:1343927/1‑140 (MQ=255)

                                                                                                           tgGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACa                      >  1:1074951/1‑140 (MQ=255)

                                                                                                           tgGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACa                      <  2:812329/140‑1 (MQ=255)

                                                                                                           tgGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACa                      >  1:1081925/1‑140 (MQ=255)

                                                                                                           tgGAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACa                      <  2:1407861/140‑1 (MQ=255)

                                                                                                            ggAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAg                     <  2:1440959/140‑1 (MQ=255)

                                                                                                            ggAAAATTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAg                     <  1:522657/140‑1 (MQ=255)

                                                                                                                aaTTATTTCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGtt                 >  2:375217/1‑140 (MQ=255)

                                                                                                                     tttCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGttt                <  2:1119894/136‑1 (MQ=255)

                                                                                                                     tttCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGttt                >  1:1119894/1‑136 (MQ=255)

                                                                                                                      ttCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCGCAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGgaga           <  1:1414658/140‑1 (MQ=255)

                                                                                                                      ttCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGAGTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCTCTGGTTGATTTACAGGGTTTGgaga           <  2:724553/140‑1 (MQ=255)

                                                                                                                       tCCACCAGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGaa          <  1:1133387/140‑1 (MQ=255)

                                                                                                                             aGCTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGAAAGTGCt    <  1:135766/140‑1 (MQ=255)

                                                                                                                               cTATCAGGGCGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGAAAGTGCTaa  <  2:1382302/140‑1 (MQ=255)

TACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGAAAGTGCTAA  >  NC_000913/2766225‑2766491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`