Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,188,538 C→T pseudogene (1107/2434 nt) yqiG → putative outer membrane usher protein YqiG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,188,5380CT100.0% 475.7 / NA 132pseudogene (1107/2434 nt)yqiGputative outer membrane usher protein YqiG
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (68/64);  total (68/64)

Only 100 of 133 total aligned reads displayed.

TATTCCTTATCTGACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATCCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATA  >  NC_000913/3188401‑3188672
                                                                                                                                         |                                                                                                                                      
 aTTCCTTATCTGACGCTTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCt                                                                                                                                     >  1:1143521/1‑140 (MQ=255)
 aTTCCTTATCTGACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCt                                                                                                                                     >  1:746381/1‑140 (MQ=255)
     cTTATCTGACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTAt                                                                                                                                 >  2:1042233/1‑140 (MQ=255)
       tATCTGACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTAtgg                                                                                                                               <  2:746381/140‑1 (MQ=255)
          cTGACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTAtggtgg                                                                                                                            >  2:338198/1‑140 (MQ=255)
          cTGACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTAtggtgg                                                                                                                            >  1:995124/1‑140 (MQ=255)
          cTGACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTAtggtgg                                                                                                                            >  1:975997/1‑140 (MQ=255)
           tGACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATtgtggt                                                                                                                           <  1:1156643/140‑1 (MQ=255)
           tGACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATggtggt                                                                                                                           <  2:975997/140‑1 (MQ=255)
            gACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGtt                                                                                                                          >  2:408994/1‑140 (MQ=255)
            gACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGtt                                                                                                                          >  2:115270/1‑140 (MQ=255)
            gACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGtt                                                                                                                          >  1:25802/1‑140 (MQ=255)
             aCGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGtt                                                                                                                          <  2:1179062/139‑1 (MQ=255)
             aCGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTc                                                                                                                         <  1:786079/140‑1 (MQ=255)
             aCGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTc                                                                                                                         >  2:1194760/1‑140 (MQ=255)
              cgcgTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATggtggt                                                                                                                           >  1:1411505/1‑137 (MQ=255)
              cgcgTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTc                                                                                                                         <  1:245689/139‑1 (MQ=255)
              cgcgTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCa                                                                                                                        >  1:943187/1‑140 (MQ=255)
              cgcgTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCa                                                                                                                        >  2:1225312/1‑140 (MQ=255)
                     aGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTaa                                                                                                                 >  1:1385927/1‑140 (MQ=255)
                           gATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGATTTCTCATGGGGTTGGCTGAACAGTGTATTCCTGTATGGTGGTTCAGTTTTAACAAAcc                                                                                                           >  2:1018071/1‑140 (MQ=255)
                           gATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAAcc                                                                                                           <  1:338198/140‑1 (MQ=255)
                             ttCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGt                                                                                                         <  2:809411/140‑1 (MQ=255)
                               cGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGa                                                                                                       <  1:865220/140‑1 (MQ=255)
                                   acacCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTAt                                                                                                   <  2:1143521/140‑1 (MQ=255)
                                   acacCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTAt                                                                                                   <  2:427473/140‑1 (MQ=255)
                                      ccacTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCaa                                                                                                >  1:728439/1‑140 (MQ=255)
                                         cTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTACTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTAt                                                                                                   >  2:220174/1‑134 (MQ=255)
                                          tGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTg                                                                                                        >  1:464979/1‑128 (MQ=255)
                                          tGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAAtctc                                                                                            >  2:524842/1‑140 (MQ=255)
                                            cTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTg                                                                                          <  1:1225312/140‑1 (MQ=255)
                                              aTGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGc                                                                                        >  1:179698/1‑140 (MQ=255)
                                               tGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCt                                                                                       >  2:160770/1‑140 (MQ=255)
                                                 ggTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGc                                                                                     >  1:198834/1‑140 (MQ=255)
                                                    aaaCCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTgg                                                                                         <  1:439463/133‑1 (MQ=255)
                                                    aaaCCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTgg                                                                                         >  2:439463/1‑133 (MQ=255)
                                                      aCCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCg                                                                                >  2:1459525/1‑140 (MQ=255)
                                                      aCCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCg                                                                                >  1:763101/1‑140 (MQ=255)
                                                      aCCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCg                                                                                >  2:514510/1‑140 (MQ=255)
                                                      aCCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCg                                                                                >  1:586847/1‑140 (MQ=255)
                                                         gACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTg                                                                             <  2:943187/140‑1 (MQ=255)
                                                          aCCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCg                                                                                >  1:565378/1‑136 (MQ=255)
                                                          aCCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCg                                                                                <  2:565378/136‑1 (MQ=255)
                                                           ccAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTGACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGt                                                                           >  2:756970/1‑140 (MQ=255)
                                                           ccAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGt                                                                           >  1:750285/1‑140 (MQ=255)
                                                           ccAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGt                                                                           >  2:270039/1‑140 (MQ=255)
                                                           ccAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGt                                                                           >  2:455205/1‑140 (MQ=255)
                                                            cAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGtt                                                                          <  2:592612/140‑1 (MQ=255)
                                                                 ttGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAAt                                                                     <  2:586847/140‑1 (MQ=255)
                                                                   ggtggtGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCt                                                                   <  1:1194760/140‑1 (MQ=255)
                                                                    gtggtgATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCtt                                                                  <  1:408994/140‑1 (MQ=255)
                                                                    gtggtgATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCtt                                                                  <  2:1455621/140‑1 (MQ=255)
                                                                      ggtgATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTaa                                                                <  2:198834/140‑1 (MQ=255)
                                                                       gtgATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAAc                                                               <  2:100766/140‑1 (MQ=255)
                                                                            tCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCAtt                                                          <  1:670659/140‑1 (MQ=255)
                                                                              cTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGCTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAg                                                        >  1:503335/1‑140 (MQ=255)
                                                                                        cccTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCAtt                                                          <  1:513152/128‑1 (MQ=255)
                                                                                        cccTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATc                                              >  1:115483/1‑140 (MQ=255)
                                                                                        cccTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATc                                              >  1:167013/1‑140 (MQ=255)
                                                                                          cttcttCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCtt                                            >  2:692695/1‑140 (MQ=255)
                                                                                           ttcttcTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCttt                                           <  2:1385927/140‑1 (MQ=255)
                                                                                            tcttctGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCtttt                                          >  1:1479963/1‑140 (MQ=255)
                                                                                            tcttctGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCtttt                                          >  2:1424725/1‑140 (MQ=255)
                                                                                             cttctGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTg                                         <  2:115483/140‑1 (MQ=255)
                                                                                                ctGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATg                                      <  1:406736/140‑1 (MQ=255)
                                                                                                  ggACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTc                                    <  2:25802/140‑1 (MQ=255)
                                                                                                     cTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTcaca                                 <  2:763101/140‑1 (MQ=255)
                                                                                                     cTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTcaca                                 <  1:692695/140‑1 (MQ=255)
                                                                                                      tGGTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCacac                                >  2:384627/1‑140 (MQ=255)
                                                                                                       ggTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACg                               <  1:384627/140‑1 (MQ=255)
                                                                                                        gTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTcaca                                 <  1:1284963/137‑1 (MQ=255)
                                                                                                        gTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGa                              >  1:1294448/1‑140 (MQ=255)
                                                                                                        gTGAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCC‑GCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGAt                             >  2:510116/1‑140 (MQ=255)
                                                                                                          gAATTCTCATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATc                            <  2:471359/140‑1 (MQ=255)
                                                                                                               ctcATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATg                       <  1:1018071/140‑1 (MQ=255)
                                                                                                               ctcATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATg                       <  1:514510/140‑1 (MQ=255)
                                                                                                                 cATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCt                     <  2:153288/140‑1 (MQ=255)
                                                                                                                 cATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCt                     <  1:42627/140‑1 (MQ=255)
                                                                                                                 cATGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCt                     <  2:397897/140‑1 (MQ=255)
                                                                                                                  aTGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTcaca                                 <  2:656087/127‑1 (MQ=255)
                                                                                                                  aTGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTcaca                                 >  1:656087/1‑127 (MQ=255)
                                                                                                                  aTGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTc                    >  2:92710/1‑140 (MQ=255)
                                                                                                                  aTGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTc                    >  2:798948/1‑140 (MQ=255)
                                                                                                                  aTGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTc                    >  2:167576/1‑140 (MQ=255)
                                                                                                                   tGGGGTTGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCa                   <  2:728439/140‑1 (MQ=255)
                                                                                                                        ttGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGc              >  1:149228/1‑140 (MQ=255)
                                                                                                                        ttGGCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGc              <  2:1294448/140‑1 (MQ=255)
                                                                                                                          ggCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCAt            >  1:1263702/1‑140 (MQ=255)
                                                                                                                          ggCTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCAt            >  1:1191745/1‑140 (MQ=255)
                                                                                                                            cTGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATaa          <  1:798948/140‑1 (MQ=255)
                                                                                                                             tGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAAt         <  1:1424725/140‑1 (MQ=255)
                                                                                                                             tGAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAAt         <  2:1322819/140‑1 (MQ=255)
                                                                                                                             tGAACAATGTATTCCTGTATGGTGGTTCAGCTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAAt         <  2:503335/140‑1 (MQ=255)
                                                                                                                              gAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATc        >  2:66717/1‑140 (MQ=255)
                                                                                                                              gAACAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATc        <  1:837380/140‑1 (MQ=255)
                                                                                                                                 cAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCt                     >  1:54549/1‑124 (MQ=255)
                                                                                                                                 cAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCt                     <  2:54549/124‑1 (MQ=255)
                                                                                                                                 cAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAAt         >  2:178039/1‑136 (MQ=255)
                                                                                                                                 cAATGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAAt         <  1:178039/136‑1 (MQ=255)
                                                                                                                                    tGTATTCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATa  >  1:995093/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                      
TATTCCTTATCTGACGCGTAAAGGGCAGATTCGCTACACCACTGCTATGGGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGGGTTGGCTGAACAATGTATCCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGCCGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTGCATAATCAGGATA  >  NC_000913/3188401‑3188672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑