Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	394,042	A→G	pseudogene (1073/1449 nt)	yaiT →	putative autotransporter YaiT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	394,042	0	A	G	100.0%	329.3 / NA	95	pseudogene (1073/1449 nt)	yaiT	putative autotransporter YaiT
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (39/56);  total (39/56)

TTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAGCG  >  NC_000913/393909‑394176                                                                                                                                      |                                                                                                                                       ttCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAg                                                                                                                                  <  1:455907/140‑1 (MQ=255) ttCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAg                                                                                                                                  >  2:830736/1‑140 (MQ=255) ttCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAg                                                                                                                                  <  2:416924/140‑1 (MQ=255)    aacaacGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGt                                                                                                                               >  1:944435/1‑140 (MQ=255)    aacaacGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGt                                                                                                                               >  2:1140419/1‑140 (MQ=255)         cGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTg                                                                                                                          <  1:563614/140‑1 (MQ=255)           aCCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGt                                                                                                                        <  2:143651/140‑1 (MQ=255)           aCCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGt                                                                                                                        <  2:58558/140‑1 (MQ=255)           aCCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGt                                                                                                                        >  2:468686/1‑140 (MQ=255)             cTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCt                                                                                                                      >  1:443072/1‑140 (MQ=255)                tCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGtt                                                                                                                   <  2:1334472/140‑1 (MQ=255)                     aaCCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGt                                                                                                              <  2:282760/140‑1 (MQ=255)                         aTGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTgg                                                                                                          >  1:999674/1‑140 (MQ=255)                         aTGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTgg                                                                                                          <  1:234607/140‑1 (MQ=255)                         aTGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTgg                                                                                                          <  2:1357066/140‑1 (MQ=255)                         aTGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTgg                                                                                                          <  2:944435/140‑1 (MQ=255)                          tGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGt                                                                                                         >  1:707443/1‑140 (MQ=255)                          tGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGt                                                                                                         >  2:1466691/1‑140 (MQ=255)                          tGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGt                                                                                                         >  1:986438/1‑140 (MQ=255)                            aGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGtga                                                                                                       >  2:1344907/1‑140 (MQ=255)                            aGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGtga                                                                                                       <  1:830736/140‑1 (MQ=255)                              cAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGtgatg                                                                                                     <  2:999674/140‑1 (MQ=255)                               aaCGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGTTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGtgatga                                                                                                    >  1:78718/1‑140 (MQ=255)                               aaCGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGtgatga                                                                                                    >  1:1167269/1‑140 (MQ=255)                                 gggTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAGCTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACt                                                                                                  <  2:1054548/139‑1 (MQ=255)                                 cGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCGGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACt                                                                                                  >  2:292804/1‑140 (MQ=255)                                 cGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCTGCAGCGTTTCTGGTCTGTTCCAGTCTGGtgat                                                                                                      >  1:595834/1‑136 (MQ=255)                                 cGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCTGCAGCGTTTCTGGTCTGTTCCAGTCTGGtgat                                                                                                      <  2:595834/136‑1 (MQ=255)                                 cGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGtgat                                                                                                      >  1:35159/1‑136 (MQ=255)                                 cGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGtgat                                                                                                      <  2:35159/136‑1 (MQ=255)                                 cGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACt                                                                                                  >  2:484716/1‑140 (MQ=255)                                 cGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACt                                                                                                  <  2:1161715/140‑1 (MQ=255)                                 cGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACt                                                                                                  >  2:1312749/1‑140 (MQ=255)                                 cGGTACTTACGTTGACGGAAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACt                                                                                                  >  2:994978/1‑140 (MQ=255)                                   gTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTAc                                                                                                <  2:195109/140‑1 (MQ=255)                                   gTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTAc                                                                                                <  2:1083791/140‑1 (MQ=255)                                   gTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTAc                                                                                                <  2:144399/140‑1 (MQ=255)                                      cTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAg                                                                                             <  2:562066/140‑1 (MQ=255)                                           gTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAg                                                                                        >  1:1205383/1‑140 (MQ=255)                                            ttGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGc                                                                                       <  1:484716/140‑1 (MQ=255)                                              gACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCaa                                                                                     >  2:821392/1‑140 (MQ=255)                                              gACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCaa                                                                                     >  2:889479/1‑140 (MQ=255)                                              gACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCaa                                                                                     >  1:455745/1‑140 (MQ=255)                                                     gCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATg                                                                              >  1:1098684/1‑140 (MQ=255)                                                     gCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATg                                                                              >  1:1320267/1‑140 (MQ=255)                                                       aCCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGaa                                                                            <  2:443072/140‑1 (MQ=255)                                                       aCCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGaa                                                                            <  1:141842/140‑1 (MQ=255)                                                          aaCTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGt                                                                         <  1:994978/140‑1 (MQ=255)                                                                gACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACgg                                                                   <  1:66309/140‑1 (MQ=255)                                                                gACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACgg                                                                   <  2:707443/140‑1 (MQ=255)                                                                 aCGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGt                                                                  >  2:1367989/1‑140 (MQ=255)                                                                  cGCTTGGGGCTTCGGTTTGAAAGCGGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTc                                                                 <  1:292804/140‑1 (MQ=255)                                                                  cGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTc                                                                 <  1:338223/140‑1 (MQ=255)                                                                  cGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTc                                                                 <  2:1205383/140‑1 (MQ=255)                                                                  cGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTc                                                                 <  1:406806/140‑1 (MQ=255)                                                                  cGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTc                                                                 <  1:43831/140‑1 (MQ=255)                                                                      tGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACgg                                                                   <  2:754307/134‑1 (MQ=255)                                                                      tGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACgg                                                                   >  1:754307/1‑134 (MQ=255)                                                                       ggggCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCt                                                            >  2:802455/1‑140 (MQ=255)                                                                         ggCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTa                                                          <  2:120155/140‑1 (MQ=255)                                                                             tCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGAc                                                      >  2:210316/1‑140 (MQ=255)                                                                                gTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGc                                                   <  1:1215350/140‑1 (MQ=255)                                                                                  ttGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCAt                                                 <  1:1367989/140‑1 (MQ=255)                                                                                  ttGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCAt                                                 <  2:1017397/140‑1 (MQ=255)                                                                                      aaGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGCCATGAAAGATGACGGTCAGTGTTACGACAGCATGCGt                                             >  1:1382443/1‑140 (MQ=255)                                                                                            gTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGaa                                       <  1:550102/140‑1 (MQ=255)                                                                                            gTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGaa                                       <  1:1344907/140‑1 (MQ=255)                                                                                            gTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGaa                                       <  1:468686/140‑1 (MQ=255)                                                                                            gTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGaa                                       <  2:193896/140‑1 (MQ=255)                                                                                            gTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGaa                                       <  2:986438/140‑1 (MQ=255)                                                                                            gTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGaa                                       <  1:802455/140‑1 (MQ=255)                                                                                                  aCTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGaa                                       >  1:713299/1‑134 (MQ=255)                                                                                                  aCTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGaa                                       <  2:713299/134‑1 (MQ=255)                                                                                                      cAAACTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGATATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAg                             >  1:244682/1‑140 (MQ=255)                                                                                                         aCTGGGTGATGTTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATg                          <  2:78718/140‑1 (MQ=255)                                                                                                         aCTGGGTGATGCTTGTTTCGTGACTCCATGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGGCTACCAGCTGAGCAACGAGATGAAAGTTGACGGTTAGTCTTTCAACAGCATGCGTTATGAACTGGGTGTAGATg                          <  2:1382443/140‑1 (MQ=255)                                                                                                         aCTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATg                          <  2:1167269/140‑1 (MQ=255)                                                                                                         aCTGGGTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATg                          <  1:889479/140‑1 (MQ=255)                                                                                                              gTGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGATATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGt                     <  2:244682/140‑1 (MQ=255)                                                                                                               tGATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGtt                    <  1:504873/140‑1 (MQ=255)                                                                                                                gATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTta                   <  2:1098684/140‑1 (MQ=255)                                                                                                                gATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTta                   <  1:964389/140‑1 (MQ=255)                                                                                                                gATGCTGGTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTta                   <  2:1320267/140‑1 (MQ=255)                                                                                                                       gTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGAt                           >  2:1076069/1‑125 (MQ=255)                                                                                                                       gTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGAt                           <  1:1076069/125‑1 (MQ=255)                                                                                                                       gTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTc            >  2:1086587/1‑140 (MQ=255)                                                                                                                       gTTACGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTc            >  2:1122061/1‑140 (MQ=255)                                                                                                                          aCGTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCAcc         <  1:76324/140‑1 (MQ=255)                                                                                                                            gTGACTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTa       <  1:1312749/140‑1 (MQ=255)                                                                                                                               aCTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTTGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAg    >  2:1390110/1‑140 (MQ=255)                                                                                                                               aCTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAg    >  2:654548/1‑140 (MQ=255)                                                                                                                                cTCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAGc   <  1:210316/140‑1 (MQ=255)                                                                                                                                 tCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTTCCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAGCg  >  1:1456485/1‑140 (MQ=255)                                                                                                                                 tCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTa       >  1:219899/1‑135 (MQ=255)                                                                                                                                 tCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTa       <  2:219899/135‑1 (MQ=255)                                                                                                                                 tCCTTGCGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAGCg  >  2:174467/1‑140 (MQ=255)                                                                                                                                      |                                                                                                                                       TTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAGCG  >  NC_000913/393909‑394176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑