BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	401,670	T→C	intergenic (+24/‑77)	iraP → / → phoA	anti‑adaptor protein for sigma(S) stabilization/alkaline phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	401,670	0	T	C	100.0%	365.5 / NA	104	intergenic (+24/‑77)	iraP/phoA	anti‑adaptor protein for sigma(S) stabilization/alkaline phosphatase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (45/59); total (45/59)

Only 100 of 104 total aligned reads displayed.

ATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTACCCCTGTGACA  >  NC_000913/401534‑401803

atCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCAt                                                                                                                                    >  2:118712/1‑140 (MQ=255)

     gTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGt                                                                                                                               >  2:113178/1‑140 (MQ=255)

         agGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTc                                                                                                                           <  1:1327254/140‑1 (MQ=255)

          gggggCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCa                                                                                                                          >  2:1085219/1‑140 (MQ=255)

          gggggCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCa                                                                                                                          >  2:1219553/1‑140 (MQ=255)

          gggggCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCa                                                                                                                          <  2:846423/140‑1 (MQ=255)

          gggggCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCa                                                                                                                          <  2:1036665/140‑1 (MQ=255)

          gggggCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCa                                                                                                                          <  2:671340/140‑1 (MQ=255)

          gggggCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCa                                                                                                                          >  2:1328273/1‑140 (MQ=255)

           ggggCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCAc                                                                                                                         >  1:403098/1‑140 (MQ=255)

               cgcTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGcc                                                                                                                     >  1:1460198/1‑140 (MQ=255)

               cgcTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGcc                                                                                                                     <  1:442135/140‑1 (MQ=255)

               cgcTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGcc                                                                                                                     >  1:474459/1‑140 (MQ=255)

               cgcTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGcc                                                                                                                     <  1:1219553/140‑1 (MQ=255)

               cgcTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGcc                                                                                                                     >  2:481380/1‑140 (MQ=255)

               cgcTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGcc                                                                                                                     <  2:1039866/140‑1 (MQ=255)

               cgcTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGcc                                                                                                                     <  1:1085219/140‑1 (MQ=255)

                gcTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCg                                                                                                                    >  2:1228422/1‑140 (MQ=255)

                      cGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCa                                                                                                                          >  2:1196330/1‑128 (MQ=255)

                      cGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCa                                                                                                                          <  1:1196330/128‑1 (MQ=255)

                         ggTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCCTTTCAACAGCTGCCATAAAGTTGTCACGGCCg                                                                                                                    >  1:1065297/1‑131 (MQ=255)

                         ggTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCCTTTCAACAGCTGCCATAAAGTTGTCACGGCCg                                                                                                                    <  2:1065297/131‑1 (MQ=255)

                             aaGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCg                                                                                                       <  1:873511/140‑1 (MQ=255)

                              aGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGcc                                                                                                                     <  1:847222/125‑1 (MQ=255)

                              aGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGcc                                                                                                                     >  2:847222/1‑125 (MQ=255)

                              aGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGc                                                                                                                      >  2:139059/1‑124 (MQ=255)

                              aGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGc                                                                                                                      <  1:139059/124‑1 (MQ=255)

                              aGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCg                                                                                                                    <  1:671373/126‑1 (MQ=255)

                              aGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCg                                                                                                                    >  2:671373/1‑126 (MQ=255)

                              aGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGc                                                                                                      >  1:135156/1‑140 (MQ=255)

                              aGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGc                                                                                                      >  2:796470/1‑140 (MQ=255)

                                cccGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCtt                                                                                                    >  1:246884/1‑140 (MQ=255)

                                cccGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCtt                                                                                                    <  1:407972/140‑1 (MQ=255)

                                    aTGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCTATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGtt                                                                                                >  1:363299/1‑140 (MQ=255)

                                     tGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGttt                                                                                               >  2:1142190/1‑140 (MQ=255)

                                     tGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGttt                                                                                               <  2:246884/140‑1 (MQ=255)

                                       ccAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGttttt                                                                                             <  2:317696/140‑1 (MQ=255)

                                         aGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTAt                                                                                           >  1:1308282/1‑140 (MQ=255)

                                              tCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTAtttttt                                                                                      >  1:819434/1‑140 (MQ=255)

                                               ccTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATC‑TTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTaa                                                                                    <  2:1204900/140‑1 (MQ=255)

                                                cTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTaa                                                                                    <  1:1142190/140‑1 (MQ=255)

                                                cTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTaa                                                                                    <  1:1059224/140‑1 (MQ=255)

                                                cTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTaa                                                                                    <  1:118712/140‑1 (MQ=255)

                                                cTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTaa                                                                                    <  1:1328273/140‑1 (MQ=255)

                                                cTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTaa                                                                                    <  2:819434/140‑1 (MQ=255)

                                                  gacgccGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATg                                                                                  <  2:1358252/140‑1 (MQ=255)

                                                  gacgacGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATg                                                                                  <  1:889919/140‑1 (MQ=255)

                                                  gacgacGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATg                                                                                  <  1:1289108/140‑1 (MQ=255)

                                                    cgacgaTACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTa                                                                                <  1:796470/140‑1 (MQ=255)

                                                    cgacgaTACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTa                                                                                <  1:1228422/140‑1 (MQ=255)

                                                     gacgaTACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTAt                                                                               >  2:564504/1‑140 (MQ=255)

                                                     gacgaTACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTAt                                                                               <  2:403098/140‑1 (MQ=255)

                                                        gaTACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAAt                                                                                   <  1:728047/133‑1 (MQ=255)

                                                        gaTACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAAt                                                                                   >  2:728047/1‑133 (MQ=255)

                                                        gaTACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTg                                                                            <  2:1398471/140‑1 (MQ=255)

                                                          tACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTaa                                                                                    <  2:144673/130‑1 (MQ=255)

                                                          tACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTaa                                                                                    >  1:144673/1‑130 (MQ=255)

                                                            cGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACa                                                                        <  1:159367/140‑1 (MQ=255)

                                                               aGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATgg                                                                     <  2:755267/140‑1 (MQ=255)

                                                                 ctgctgCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTaa                                                                                    <  1:373142/123‑1 (MQ=255)

                                                                 ctgctgCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTaa                                                                                    >  2:373142/1‑123 (MQ=255)

                                                                 ctgctgCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGgag                                                                   >  2:171350/1‑140 (MQ=255)

                                                                    ctgcGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGga                                                                    <  1:1040477/136‑1 (MQ=255)

                                                                    ctgcGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGga                                                                    >  2:1040477/1‑136 (MQ=255)

                                                                     tgcGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGaaaa                                                               >  1:612699/1‑140 (MQ=255)

                                                                       cgcgATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATa                                                             <  1:549094/140‑1 (MQ=255)

                                                                         cgATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATaaa                                                           >  2:1032/1‑140 (MQ=255)

                                                                         cgATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATaaa                                                           >  1:1171711/1‑140 (MQ=255)

                                                                            ttACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTg                                                        <  2:145072/140‑1 (MQ=255)

                                                                                 tAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACa                                                   <  1:1055093/140‑1 (MQ=255)

                                                                                    agaagTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAg                                                <  2:1171711/140‑1 (MQ=255)

                                                                                    agaagTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAg                                                <  1:564504/140‑1 (MQ=255)

                                                                                      aagTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAg                                                >  2:266940/1‑138 (MQ=255)

                                                                                      aagTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAg                                                <  1:266940/138‑1 (MQ=255)

                                                                                      aagTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCa                                              >  1:548559/1‑140 (MQ=255)

                                                                                              gAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCa                                      <  1:991483/140‑1 (MQ=255)

                                                                                              gAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCa                                      <  1:481380/140‑1 (MQ=255)

                                                                                                aGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACt                                    >  2:588638/1‑140 (MQ=255)

                                                                                                   aTCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACt                                    <  1:1260495/137‑1 (MQ=255)

                                                                                                   aTCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACt                                    >  2:1260495/1‑137 (MQ=255)

                                                                                                    tCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCa                                <  1:40642/140‑1 (MQ=255)

                                                                                                    tCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCa                                <  1:588638/140‑1 (MQ=255)

                                                                                                    tCCTCATCAGTAAAAAGTTAATCTTTACAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGCAAATAAAGTGAAACAAAGCACTATTGCACTGGCa                                <  2:1308282/140‑1 (MQ=255)

                                                                                                     ccTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCa                                              >  1:357800/1‑125 (MQ=255)

                                                                                                     ccTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCa                                              <  2:357800/125‑1 (MQ=255)

                                                                                                      cTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCAct                              <  1:1032/140‑1 (MQ=255)

                                                                                                      cTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCAct                              >  2:1373496/1‑140 (MQ=255)

                                                                                                      cTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCAct                              >  1:250929/1‑140 (MQ=255)

                                                                                                      cTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCAct                              >  2:1134134/1‑140 (MQ=255)

                                                                                                            aGTAAAAAGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTAcc                        >  1:471546/1‑140 (MQ=255)

                                                                                                                aaaaGTTAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTa                    <  2:363299/140‑1 (MQ=255)

                                                                                                                     ttAATCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGtt               <  2:471546/140‑1 (MQ=255)

                                                                                                                       aaTCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTa             <  1:113178/140‑1 (MQ=255)

                                                                                                                        aTCTTTTCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTAc            >  2:638059/1‑140 (MQ=255)

                                                                                                                           ttttCAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTAcccc         <  2:548559/140‑1 (MQ=255)

                                                                                                                               cAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTACCCCtgtg     >  2:544286/1‑140 (MQ=255)

                                                                                                                               cAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTACCCCtgtg     >  2:867758/1‑140 (MQ=255)

                                                                                                                               cAACAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTACCCCtgtg     >  2:966581/1‑140 (MQ=255)

                                                                                                                                  cAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTACCCCTGTGACa  <  1:1373496/140‑1 (MQ=255)

                                                                                                                                  cAGCTGCCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTACCCCTGTGACa  <  1:1134134/140‑1 (MQ=255)

ATCAGGTAGAGGGGGCGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGTTGTCACGGCCGAGACTTATAGTCGCTTTGTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAGTGAAACAAAGCACTATTGCACTGGCACTCTTACCGTTACTGTTTACCCCTGTGACA  >  NC_000913/401534‑401803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`