BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,272,125	T→C	Y3H (TAT→CAT)	chaB →	putative cation transport regulator ChaB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,272,125	0	T	C	100.0%	423.9 / NA	120	Y3H (TAT→CAT)	chaB	putative cation transport regulator ChaB
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (61/59); total (61/59)

Only 100 of 122 total aligned reads displayed.

AAGTATTACGTTTAGACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGTATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATATAAAGATAAAGAAGATCGGCGTGATGACGCCAGTCG  >  NC_000913/1271989‑1272261

aaGTATTACGTTTAGACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGcata                                                                                                                                       >  2:1194554/1‑140 (MQ=255)

    aTTACGTTTAGACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAAc                                                                                                                                   <  2:622331/140‑1 (MQ=255)

           ttAGACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGc                                                                                                                            >  1:1335185/1‑140 (MQ=255)

           ttAGACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAAC‑TTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCg                                                                                                                           <  1:911353/140‑1 (MQ=255)

             aGACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGa                                                                                                                          >  1:201767/1‑140 (MQ=255)

             aGACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGa                                                                                                                          >  1:1254932/1‑140 (MQ=255)

             aGACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGa                                                                                                                          >  2:1130778/1‑140 (MQ=255)

             aGACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGa                                                                                                                          >  2:1036863/1‑140 (MQ=255)

             aGACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGa                                                                                                                          >  2:1096075/1‑140 (MQ=255)

              gACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGAt                                                                                                                         <  2:1335185/140‑1 (MQ=255)

                   tgtttgttTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCg                                                                                                                           <  2:675376/133‑1 (MQ=255)

                   tgtttgttTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCg                                                                                                                           >  1:675376/1‑133 (MQ=255)

                   tgtttgttTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGcc                                                                                                                    >  2:654663/1‑140 (MQ=255)

                      ttgtttTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGa                                                                                                                 <  1:1194554/140‑1 (MQ=255)

                        gtttTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGaaa                                                                                                               >  2:613838/1‑140 (MQ=255)

                        gtttTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGaaa                                                                                                               <  1:613838/140‑1 (MQ=255)

                             aGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGACGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTa                                                                                                          <  1:1323180/140‑1 (MQ=255)

                             aGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTGGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTa                                                                                                          >  1:213035/1‑140 (MQ=255)

                              gCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTaa                                                                                                         >  2:1070127/1‑140 (MQ=255)

                               cGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTaaa                                                                                                        <  2:1254932/140‑1 (MQ=255)

                                   tctTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCAc                                                                                                    >  1:1392045/1‑140 (MQ=255)

                                     ttAAGAAGAGTCTGGCCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATTTGCCGCAAAGCGTAAAGCACGt                                                                                                  <  2:654489/140‑1 (MQ=255)

                                     ttAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGt                                                                                                  >  2:827534/1‑140 (MQ=255)

                                            gagTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCg                                                                                           >  2:229608/1‑140 (MQ=255)

                                             agTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGt                                                                                          >  1:1190058/1‑140 (MQ=255)

                                             agTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGt                                                                                          >  2:24478/1‑140 (MQ=255)

                                             agTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGt                                                                                          >  1:1133183/1‑140 (MQ=255)

                                             agTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGt                                                                                          >  2:1312931/1‑140 (MQ=255)

                                             agTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGt                                                                                          >  2:655656/1‑140 (MQ=255)

                                             agTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGt                                                                                          >  1:1320456/1‑140 (MQ=255)

                                             agTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGt                                                                                          >  2:1159928/1‑140 (MQ=255)

                                              gTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGtc                                                                                         <  1:1070127/140‑1 (MQ=255)

                                               tCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGtct                                                                                        >  2:1120639/1‑140 (MQ=255)

                                               tCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGtct                                                                                        >  2:1427608/1‑140 (MQ=255)

                                               tCTGACCTGAAAATTCTTATGTTTGGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGtct                                                                                        <  2:213035/140‑1 (MQ=255)

                                                cTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGtctc                                                                                       <  1:248256/140‑1 (MQ=255)

                                                 tGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCa                                                                                      <  2:1320456/140‑1 (MQ=255)

                                                   tccTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATg                                                                                    <  2:1215936/139‑1 (MQ=255)

                                                   aCCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATg                                                                                    <  2:201767/140‑1 (MQ=255)

                                                    ccTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGc                                                                                   <  1:24478/140‑1 (MQ=255)

                                                      tGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGccc                                                                                 <  2:1190058/140‑1 (MQ=255)

                                                          aaTTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGa                                                                             <  1:1159928/140‑1 (MQ=255)

                                                           aTTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGat                                                                            <  2:1111210/140‑1 (MQ=255)

                                                           aTTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGat                                                                            <  1:271657/140‑1 (MQ=255)

                                                           aTTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGat                                                                            <  2:573983/140‑1 (MQ=255)

                                                             tCTTATGTTTTGGCAAGAGTAGATATTGTTAACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGatat                                                                          <  1:238193/140‑1 (MQ=255)

                                                                     tttGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAaag                                                                  <  1:1408598/140‑1 (MQ=255)

                                                                          cAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCg                                                             <  1:194622/140‑1 (MQ=255)

                                                                               gTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCaa                                                        <  1:1036863/140‑1 (MQ=255)

                                                                               gTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCaa                                                        <  1:1130778/140‑1 (MQ=255)

                                                                                  gATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAATCGTTCAACAg                                                     <  2:666816/140‑1 (MQ=255)

                                                                                  gATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAg                                                     <  1:799516/140‑1 (MQ=255)

                                                                                       tgttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCAt                                                >  2:1475491/1‑140 (MQ=255)

                                                                                       tgttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCAt                                                <  1:229608/140‑1 (MQ=255)

                                                                                        gttgACTACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATg                                               >  1:493677/1‑140 (MQ=255)

                                                                                        gttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAgcgc                                                  <  2:1353575/137‑1 (MQ=255)

                                                                                        gttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAgcgc                                                  >  1:1353575/1‑137 (MQ=255)

                                                                                        gttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCAt                                                <  2:522866/139‑1 (MQ=255)

                                                                                        gttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCAt                                                <  1:377084/139‑1 (MQ=255)

                                                                                        gttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCAt                                                >  1:522866/1‑139 (MQ=255)

                                                                                        gttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATg                                               >  2:484115/1‑140 (MQ=255)

                                                                                        gttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATg                                               >  2:472530/1‑140 (MQ=255)

                                                                                        gttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATg                                               >  1:1056302/1‑140 (MQ=255)

                                                                                         ttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCAt                                                >  2:435224/1‑138 (MQ=255)

                                                                                         ttgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATgg                                              <  1:1475491/140‑1 (MQ=255)

                                                                                          tgACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATggg                                             >  2:895259/1‑140 (MQ=255)

                                                                                           gACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGa                                            <  2:198906/140‑1 (MQ=255)

                                                                                            aCCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACTAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGAt                                           <  1:1228799/140‑1 (MQ=255)

                                                                                            aCCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGAt                                           >  2:1291225/1‑140 (MQ=255)

                                                                                            aCCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGAt                                           <  1:1096075/140‑1 (MQ=255)

                                                                                            aCCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGAt                                           >  2:1395466/1‑140 (MQ=255)

                                                                                            aCCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGAt                                           <  1:360102/140‑1 (MQ=255)

                                                                                             ccACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCATGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGAt                                           >  1:262830/1‑139 (MQ=255)

                                                                                             ccACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCATGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGAt                                           <  2:262830/139‑1 (MQ=255)

                                                                                              cacaCTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAg                                                     <  2:1137336/128‑1 (MQ=255)

                                                                                              cacaCTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAg                                                     >  1:1137336/1‑128 (MQ=255)

                                                                                              cacaCTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCa                                         >  1:609235/1‑140 (MQ=255)

                                                                                                 acTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAgcg                                                   <  2:1349635/127‑1 (MQ=255)

                                                                                                 acTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAgcg                                                   >  1:1349635/1‑127 (MQ=255)

                                                                                                 acTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATc                                          >  1:797589/1‑136 (MQ=255)

                                                                                                 acTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATc                                          <  2:797589/136‑1 (MQ=255)

                                                                                                 acTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATG‑CCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAatat                                     <  1:644474/140‑1 (MQ=255)

                                                                                                  cTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAatat                                     <  1:1395466/140‑1 (MQ=255)

                                                                                                   ttAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAAtata                                    <  2:1133183/140‑1 (MQ=255)

                                                                                                    tAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATataa                                   <  2:493677/140‑1 (MQ=255)

                                                                                                    tAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATataa                                   <  1:1427608/140‑1 (MQ=255)

                                                                                                      aTGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAATAGCGCATGGGAt                                           >  2:638265/1‑130 (MQ=255)

                                                                                                      aTGTTCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAATAGCGCATGGGAt                                           <  1:638265/130‑1 (MQ=255)

                                                                                                         ttCAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATataaagata                              <  1:1120639/140‑1 (MQ=255)

                                                                                                           cAACTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATataaagataaa                            >  2:893756/1‑140 (MQ=255)

                                                                                                             aCTTTGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATAtaaagataaaga                          <  1:828948/140‑1 (MQ=255)

                                                                                                                ttGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATATAAAGATAAagaaga                       <  2:1382444/140‑1 (MQ=255)

                                                                                                                ttGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATATAAAGATAAagaaga                       <  1:472530/140‑1 (MQ=255)

                                                                                                                 tGTAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCATTCAACAGCGCATGGGATCAATATAAAGATAAAGAAGAt                      <  1:856721/140‑1 (MQ=255)

                                                                                                                   tAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATATAAAGATAAagaaga                       >  1:1102589/1‑137 (MQ=255)

                                                                                                                   tAAAAGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATATAAAGATAAAGAAGATCg                    >  2:234865/1‑140 (MQ=255)

                                                                                                                     aaaGGAGTCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATATAAAGATAAAGAAGATCGGc                  <  1:895259/140‑1 (MQ=255)

                                                                                                                            tCAACGATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATATAAAGATAAAGAAGATCGGCGtgatga           >  1:4442/1‑140 (MQ=255)

                                                                                                                                 gATGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATATAAAGATAAAGAAGATCGGCGTGATGACGCCa      <  1:223023/140‑1 (MQ=255)

                                                                                                                                   tGCCGCATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATATAAAGATAAAGAAGATCGGCGTGATGACGCCAGt    <  1:415724/140‑1 (MQ=255)

AAGTATTACGTTTAGACAATGTTTGTTTTAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAAGAGTAGATATTGTTGACCACACTTAATGTTCAACTTTGTAAAAGGAGTCAACGATGCCGTATAAAACGAAAAGCGATCTGCCGGAAAGCGTAAAGCACGTTCTACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATATAAAGATAAAGAAGATCGGCGTGATGACGCCAGTCG  >  NC_000913/1271989‑1272261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`