BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,310,751	T→C	T39A (ACA→GCA)	yciI ←	protein YciI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,310,751	0	T	C	100.0%	367.9 / NA	105	T39A (ACA→GCA)	yciI	protein YciI
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (48/57); total (48/57)

Only 100 of 105 total aligned reads displayed.

TCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGTCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGCACAACTCCTTGTTCGGGA  >  NC_000913/1310614‑1310887

tCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCca                                                                                                                                        >  1:717785/1‑140 (MQ=255)

  cTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCcaac                                                                                                                                      >  1:863681/1‑140 (MQ=255)

  cTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCcaac                                                                                                                                      >  1:1210973/1‑140 (MQ=255)

    gCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCcaacaa                                                                                                                                    >  1:1277505/1‑140 (MQ=255)

     ccGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACaaa                                                                                                                                   <  2:382345/140‑1 (MQ=255)

      cGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAAc                                                                                                                                  <  1:1360170/140‑1 (MQ=255)

       gCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACg                                                                                                                                 <  2:452210/140‑1 (MQ=255)

        cTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATATCGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGa                                                                                                                                >  2:23083/1‑140 (MQ=255)

         tacgtacgGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGAc                                                                                                                               <  2:178920/140‑1 (MQ=255)

         tacgtacgGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGAc                                                                                                                               <  2:863681/140‑1 (MQ=255)

          acgtacgGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGAcc                                                                                                                              >  1:953829/1‑140 (MQ=255)

          acgtacgGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGAcc                                                                                                                              >  2:853899/1‑140 (MQ=255)

           cgtacgGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCt                                                                                                                             <  2:192359/140‑1 (MQ=255)

            gtacgGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCca                                                                                                                                        >  2:812363/1‑128 (MQ=255)

               cgGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTtcat                                                                                                                         <  1:1202352/140‑1 (MQ=255)

                  gTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTcatcat                                                                                                                      >  2:200157/1‑140 (MQ=255)

                     aGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATATCGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCa                                                                                                                   <  1:23083/140‑1 (MQ=255)

                     aGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAAT‑CCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAg                                                                                                                  <  2:876827/140‑1 (MQ=255)

                      gCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAg                                                                                                                  >  1:207025/1‑140 (MQ=255)

                       cATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGt                                                                                                                 >  1:83657/1‑140 (MQ=255)

                       cATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGt                                                                                                                 <  2:1270251/140‑1 (MQ=255)

                       cATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGt                                                                                                                 <  2:1210973/140‑1 (MQ=255)

                       cATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGt                                                                                                                 <  1:1318103/140‑1 (MQ=255)

                       cATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGt                                                                                                                 <  1:165043/140‑1 (MQ=255)

                       cATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGt                                                                                                                 <  2:83657/140‑1 (MQ=255)

                          cGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAAc                                                                                                              <  2:703827/140‑1 (MQ=255)

                            gCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTtcatca                                                                                                                       <  2:936220/129‑1 (MQ=255)

                            gCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTtcatca                                                                                                                       >  1:936220/1‑129 (MQ=255)

                            gCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTtcat                                                                                                                         <  1:724764/127‑1 (MQ=255)

                            gCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTtcat                                                                                                                         >  2:724764/1‑127 (MQ=255)

                            gCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGt                                                                                                                 <  1:853140/135‑1 (MQ=255)

                            gCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGt                                                                                                                 >  2:853140/1‑135 (MQ=255)

                            gCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTg                                                                                                            >  1:28971/1‑140 (MQ=255)

                                aGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTaaa                                                                                                        <  1:1476726/140‑1 (MQ=255)

                                aGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTaaa                                                                                                        <  1:853899/140‑1 (MQ=255)

                                aGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTaaa                                                                                                        <  1:471544/140‑1 (MQ=255)

                                 ggCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAAc                                                                                                       >  1:747747/1‑140 (MQ=255)

                                 ggCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAAc                                                                                                       >  1:1233624/1‑140 (MQ=255)

                                    cTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACAACCTTCATCATGCAGTAACTGTAAACGTg                                                                                                    <  1:1473149/140‑1 (MQ=255)

                                       aGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTa                                                                                                 >  1:136352/1‑140 (MQ=255)

                                       aGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTa                                                                                                 >  2:1414579/1‑140 (MQ=255)

                                        gctgctTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTaa                                                                                                <  2:133628/140‑1 (MQ=255)

                                            ctTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAAtgt                                                                                            >  1:695414/1‑140 (MQ=255)

                                                      ttCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGaa                                                                                  >  1:874174/1‑140 (MQ=255)

                                                             tCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAg                                                                           <  1:1218427/140‑1 (MQ=255)

                                                                       cGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCg                                                                 >  2:1103707/1‑140 (MQ=255)

                                                                              gctaGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTAt                                                          <  2:1277505/137‑1 (MQ=255)

                                                                              gCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTAt                                                          <  1:200157/140‑1 (MQ=255)

                                                                                  gTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTAt                                                          >  2:638956/1‑136 (MQ=255)

                                                                                  gTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTAt                                                          <  1:638956/136‑1 (MQ=255)

                                                                                  gTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGc                                                      >  2:1456818/1‑140 (MQ=255)

                                                                                        cccGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGtt                                                >  1:827042/1‑139 (MQ=255)

                                                                                         ccGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCt                                               >  2:1134435/1‑140 (MQ=255)

                                                                                          cGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCtt                                              <  2:874174/140‑1 (MQ=255)

                                                                                            cAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGa                                            >  2:1118534/1‑140 (MQ=255)

                                                                                            cAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGa                                            >  2:795557/1‑140 (MQ=255)

                                                                                            cAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGa                                            >  1:1438855/1‑140 (MQ=255)

                                                                                              gCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGc                                          <  2:717785/140‑1 (MQ=255)

                                                                                               ccccTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCg                                         >  2:867246/1‑140 (MQ=255)

                                                                                                cccTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGt                                        <  1:1105123/140‑1 (MQ=255)

                                                                                                   tGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTaaa                                     <  2:1233624/140‑1 (MQ=255)

                                                                                                   tGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTaaa                                     <  1:1336532/140‑1 (MQ=255)

                                                                                                    ggATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAAt                                    >  2:672337/1‑140 (MQ=255)

                                                                                                    ggATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAAt                                    <  1:1456818/140‑1 (MQ=255)

                                                                                                    ggATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAAt                                    <  2:1047450/140‑1 (MQ=255)

                                                                                                     gATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATa                                   <  2:747747/140‑1 (MQ=255)

                                                                                                     gATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATa                                   <  1:1118534/140‑1 (MQ=255)

                                                                                                     gATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATa                                   <  1:795557/140‑1 (MQ=255)

                                                                                                         gTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAg                                           <  1:89117/128‑1 (MQ=255)

                                                                                                         gTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAg                                           >  2:89117/1‑128 (MQ=255)

                                                                                                         gTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACAt                               >  2:1010841/1‑140 (MQ=255)

                                                                                                         gTTACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACAt                               >  1:582424/1‑140 (MQ=255)

                                                                                                          ttACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTaaa                                     <  1:1251374/133‑1 (MQ=255)

                                                                                                          ttACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTaaa                                     >  2:1251374/1‑133 (MQ=255)

                                                                                                          ttACTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATa                              >  1:172516/1‑140 (MQ=255)

                                                                                                            aCTGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATaca                            >  1:1343736/1‑140 (MQ=255)

                                                                                                              tGTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATacaac                          <  2:28971/140‑1 (MQ=255)

                                                                                                               gTCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATacaaca                         <  2:1438855/140‑1 (MQ=255)

                                                                                                                tCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTaaa                                     <  1:459587/127‑1 (MQ=255)

                                                                                                                tCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTaaa                                     >  2:459587/1‑127 (MQ=255)

                                                                                                                tCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAacac                        <  1:1103707/140‑1 (MQ=255)

                                                                                                                tCTACCGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAacac                        <  2:738455/140‑1 (MQ=255)

                                                                                                                    ccGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGc                    <  2:582424/140‑1 (MQ=255)

                                                                                                                    ccGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGATATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGc                    >  1:377821/1‑140 (MQ=255)

                                                                                                                     cGCTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGca                   <  2:207025/140‑1 (MQ=255)

                                                                                                                      gCTGGCATTGGACCAGCTGCCCACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGATGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGcac                  <  2:1343736/140‑1 (MQ=255)

                                                                                                                       cTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGcaca                 <  1:834104/140‑1 (MQ=255)

                                                                                                                       cTGGCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGcaca                 >  2:834104/1‑140 (MQ=255)

                                                                                                                          gCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACgg                      >  1:1343866/1‑132 (MQ=255)

                                                                                                                          gCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGc                    >  2:1101949/1‑134 (MQ=255)

                                                                                                                          gCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGc                    <  1:1101949/134‑1 (MQ=255)

                                                                                                                          gCATTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGCACAACt              >  1:195687/1‑140 (MQ=255)

                                                                                                                          gCATTGGACCAGCAGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCTGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACgg                      <  2:1343866/132‑1 (MQ=255)

                                                                                                                            aTTGGACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGCACAACTcc            <  1:672337/140‑1 (MQ=255)

                                                                                                                               ggACCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGCACAACTCCTTg         >  1:1383990/1‑140 (MQ=255)

                                                                                                                                 aCCAGCTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGCACAACTCCTTGtt       >  1:754902/1‑140 (MQ=255)

                                                                                                                                      cTGCCAACAACCGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCAGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGCACAACTCCTTGTTCGGGa  <  1:1031334/140‑1 (MQ=255)

                                                                                                                                      cTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGCACAACTCCTTGTTCGGGa  <  1:1096977/140‑1 (MQ=255)

                                                                                                                                      cTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGCACAACTCCTTGTTCGGGa  <  1:1134435/140‑1 (MQ=255)

                                                                                                                                      cTGCCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGCACAACTCCTTGTTCGGGa  <  2:1383990/140‑1 (MQ=255)

TCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGTCAACAAACGACCTTCATCATGCAGTAACTGTAAACGTGCTAAATGTGCCGGACGAACGGAAAGGCGTTTTTCGAGGCTATCAGCTTTGTCTTGAGCGTAAATAACATACAACACGGGCACAACTCCTTGTTCGGGA  >  NC_000913/1310614‑1310887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`