Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,413,413	A→G	Y14H (TAC→CAC)	xisR ←	Rac prophage; excisionase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,413,413	0	A	G	100.0%	254.5 / NA	73	Y14H (TAC→CAC)	xisR	Rac prophage; excisionase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (35/38);  total (35/38)

GTACCAGATAATCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTATTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACA  >  NC_000913/1413276‑1413544                                                                                                                                          |                                                                                                                                    gTACCAGATAATCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGtt                                                                                                                                   <  1:368698/140‑1 (MQ=255)  tACCAGATAATCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTc                                                                                                                                  >  1:964130/1‑140 (MQ=255)  tACCAGATAATCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTc                                                                                                                                  >  1:135000/1‑140 (MQ=255)  tACCAGATAATCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTc                                                                                                                                  >  1:289208/1‑140 (MQ=255)    ccAGATAATCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCaa                                                                                                                                >  1:978033/1‑140 (MQ=255)         tAATCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATc                                                                                                                           >  1:1115311/1‑140 (MQ=255)           aTCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTTGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCa                                                                                                                         <  2:81945/140‑1 (MQ=255)           aTCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCa                                                                                                                         <  2:964130/140‑1 (MQ=255)           aTCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCa                                                                                                                         <  2:1248408/140‑1 (MQ=255)           aTCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCa                                                                                                                         <  2:289208/140‑1 (MQ=255)            tCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCa                                                                                                                         <  1:604836/139‑1 (MQ=255)            tCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCa                                                                                                                         >  2:604836/1‑139 (MQ=255)            tCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCAc                                                                                                                        >  1:1015330/1‑140 (MQ=255)             cccTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGTATCAGGCCGTGTTCAACCATCCAct                                                                                                                       <  2:1068287/140‑1 (MQ=255)                 cGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTc                                                                                                                   >  1:693779/1‑140 (MQ=255)                  gTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCa                                                                                                                  <  1:269683/140‑1 (MQ=255)                  gTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCa                                                                                                                  <  2:978033/140‑1 (MQ=255)                      gCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTaa                                                                                                              >  1:409519/1‑140 (MQ=255)                        tGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCCCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAg                                                                                                            >  1:722011/1‑140 (MQ=255)                              gCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACt                                                                                                      >  2:1345589/1‑140 (MQ=255)                                    cTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGcc                                                                                                >  2:715160/1‑140 (MQ=255)                                     tAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCa                                                                                               <  2:409519/140‑1 (MQ=255)                                          gagaTACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCa                                                                                          <  2:135000/140‑1 (MQ=255)                                             aTACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCa                                                                                       >  1:791504/1‑140 (MQ=255)                                                    tttGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTgg                                                                                >  2:394318/1‑140 (MQ=255)                                                    tttGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTgg                                                                                >  1:97639/1‑140 (MQ=255)                                                    tttGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTgg                                                                                >  1:1102442/1‑140 (MQ=255)                                                    tttGAAGTGGAAGCCCCCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTgg                                                                                <  2:722011/140‑1 (MQ=255)                                                      tGAAGTGGAAGCCCTCCACCCATCAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCa                                                                              <  2:1017567/140‑1 (MQ=255)                                                       gAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAg                                                                             <  1:394318/140‑1 (MQ=255)                                                           tGGAAGCCCTCCACCCAGCAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGgcgc                                                                         <  2:1314817/140‑1 (MQ=255)                                                           tGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGgcgc                                                                         <  1:715160/140‑1 (MQ=255)                                                           tGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGgcgc                                                                         <  2:1015330/140‑1 (MQ=255)                                                             gAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCa                                                                       >  2:427890/1‑140 (MQ=255)                                                                 cccTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGt                                                                   >  2:210206/1‑140 (MQ=255)                                                                  ccTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCa                                                                              <  1:805485/128‑1 (MQ=255)                                                                  ccTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCa                                                                              >  2:805485/1‑128 (MQ=255)                                                                  ccTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGtt                                                                  >  2:1280285/1‑140 (MQ=255)                                                                   cTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTa                                                                 >  2:1179709/1‑140 (MQ=255)                                                                   cTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAAAGTTa                                                                 >  2:1360020/1‑140 (MQ=255)                                                                     ccACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGa                                                               >  1:458879/1‑140 (MQ=255)                                                                            aCAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAAt                                                        >  1:427994/1‑140 (MQ=255)                                                                              aGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTg                                                      <  1:732344/140‑1 (MQ=255)                                                                                  cTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAg                                                                <  1:1149521/126‑1 (MQ=255)                                                                                  cTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAg                                                                >  2:1149521/1‑126 (MQ=255)                                                                                  cTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGc                                                  >  2:125084/1‑140 (MQ=255)                                                                                   tGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGcc                                                 <  2:693779/140‑1 (MQ=255)                                                                                         tATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGt                                           <  1:427890/140‑1 (MQ=255)                                                                                           tGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTg                                         <  2:97639/140‑1 (MQ=255)                                                                                           tGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTg                                         <  2:1102442/140‑1 (MQ=255)                                                                                             cTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGat                                       <  2:427994/140‑1 (MQ=255)                                                                                             cTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGat                                       <  1:210206/140‑1 (MQ=255)                                                                                                   tttGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGat                                       >  1:206475/1‑134 (MQ=255)                                                                                                   tttGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGat                                       <  2:206475/134‑1 (MQ=255)                                                                                                     tGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATtaata                               >  1:1235694/1‑140 (MQ=255)                                                                                                     tGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATtaata                               <  2:791504/140‑1 (MQ=255)                                                                                                     tGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGCTAGACTGAAATTGACGCCCGATGTTGATTATtaata                               <  2:1115311/140‑1 (MQ=255)                                                                                                       tCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTaataat                             <  1:1360020/140‑1 (MQ=255)                                                                                                       tCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTaataat                             >  1:397725/1‑140 (MQ=255)                                                                                                               ccAGACCAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATg                     <  1:1345589/140‑1 (MQ=255)                                                                                                                     cAGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGttt               >  2:475140/1‑140 (MQ=255)                                                                                                                      aGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGtttt              <  1:1280285/140‑1 (MQ=255)                                                                                                                      aGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGtttt              <  1:125084/140‑1 (MQ=255)                                                                                                                      aGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGtttt              <  2:397725/140‑1 (MQ=255)                                                                                                                      aGTGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGtttt              <  1:475140/140‑1 (MQ=255)                                                                                                                        tGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTaa            <  2:458879/140‑1 (MQ=255)                                                                                                                        tGCGAAGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTaa            >  2:645973/1‑140 (MQ=255)                                                                                                                             aGCATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGa       >  2:280761/1‑140 (MQ=255)                                                                                                                               cATCAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAAt     <  2:1235694/140‑1 (MQ=255)                                                                                                                                  cAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAAttt         >  2:451836/1‑133 (MQ=255)                                                                                                                                  cAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAAttt         <  1:451836/133‑1 (MQ=255)                                                                                                                                  cAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACa  >  2:1113924/1‑140 (MQ=255)                                                                                                                                  cAGGCCGTGTTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACa  >  2:1319021/1‑140 (MQ=255)                                                                                                                                          |                                                                                                                                    GTACCAGATAATCCCTCGTTTGCTGTCTGGCTTACCTAAAGGAGATACTCGTTTGAAGTGGAAGCCCTCCACCCAACAGTTCTGGCGGTATGCTTCAATTTGTCTGGCCCCCAGACCAGTGCGAAGCATCAGGCCGTATTCAACCATCCACTCTTCATTAAAGATTACTTGTGCCATCGCATCACCTCTGGCAGGCGCCAATGTTAGACTGAAATTGACGCCCGATGTTGATTATTAATAATCAGCTATGAAGTTTTAATTTGAATACA  >  NC_000913/1413276‑1413544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑