Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,594,132	(C)8→9	pseudogene (3955/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,594,124	1	.	C	100.0%	222.0 / NA	61	pseudogene (3963/5422 nt)	yneO	AIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (32/29);  total (32/29)

ACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTG‑CCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCC  >  NC_000913/1593987‑1594255                                                                                                                                            |                                                                                                                                     aCGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTG‑cc                                                                                                                                    <  2:981319/140‑1 (MQ=255) aCGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTG‑cc                                                                                                                                    <  2:339583/140‑1 (MQ=255) aCGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTG‑cc                                                                                                                                    <  1:226773/140‑1 (MQ=255) aCGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTCAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTG‑cc                                                                                                                                    <  2:329745/140‑1 (MQ=255)    tcatcaGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTG‑ccc‑cc                                                                                                                                >  2:295843/1‑140 (MQ=255)       tcaGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTG‑ccc‑ccccc                                                                                                                             <  1:636750/140‑1 (MQ=255)       tcaGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTG‑ccc‑ccccc                                                                                                                             <  2:643824/140‑1 (MQ=255)        caGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTG‑ccc‑cccccc                                                                                                                            <  1:574446/140‑2 (MQ=255)             cATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATCCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCa                                                                                                                        >  1:842381/1‑140 (MQ=255)              aTTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCAt                                                                                                                       <  1:653395/140‑1 (MQ=255)               ttGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATa                                                                                                                      >  1:174634/1‑140 (MQ=255)                tGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATaa                                                                                                                     >  2:1032884/1‑140 (MQ=255)                  tttCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACg                                                                                                                   <  2:939671/140‑1 (MQ=255)                     ccGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTc                                                                                                                >  2:568307/1‑140 (MQ=255)                     ccGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTc                                                                                                                >  2:825226/1‑140 (MQ=255)                        gTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCata                                                                                                             <  1:270571/140‑1 (MQ=255)                        gTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCata                                                                                                             >  1:554719/1‑140 (MQ=255)                          ataGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATc                                                                                                           <  1:685018/140‑1 (MQ=255)                            aGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACg                                                                                                                   >  2:367822/1‑130 (MQ=255)                            aGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACg                                                                                                                   <  1:367822/130‑1 (MQ=255)                            aGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCAc                                                                                                         >  1:165113/1‑140 (MQ=255)                            aGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCAc                                                                                                         >  1:1011760/1‑140 (MQ=255)                              ttGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCt                                                                                                       >  2:588506/1‑140 (MQ=255)                                gCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGc                                                                                                     >  2:773312/1‑140 (MQ=255)                                 ccGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTgga                                                                                                    >  2:948750/1‑138 (MQ=255)                                  cGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAg                                                                                                   <  1:118491/140‑1 (MQ=255)                                   gTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAgt                                                                                                  >  2:1148956/1‑140 (MQ=255)                                     tAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAgtgg                                                                                                <  2:174634/140‑1 (MQ=255)                                     tAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAgtgg                                                                                                >  2:1396407/1‑140 (MQ=255)                                        cGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGa                                                                                             <  1:825226/140‑1 (MQ=255)                                        cGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGa                                                                                             <  2:881297/140‑1 (MQ=255)                                           tCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACAt                                                                                          >  1:1287899/1‑140 (MQ=255)                                           tCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACAt                                                                                          >  2:352304/1‑140 (MQ=255)                                               tACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTcc                                                                                      <  1:632308/140‑1 (MQ=255)                                                    tCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACa                                                                                 >  1:1275313/1‑140 (MQ=255)                                                    tCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACa                                                                                 >  1:1388743/1‑140 (MQ=255)                                                         ggTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATcaca                                                                            >  2:882102/1‑140 (MQ=255)                                                         ggTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATcaca                                                                            >  2:257593/1‑140 (MQ=255)                                                          gTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCacac                                                                           <  2:554719/140‑1 (MQ=255)                                                            ttCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg                                                                         <  1:257593/140‑1 (MQ=255)                                                             tCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCacac                                                                           <  1:295405/137‑1 (MQ=255)                                                             tCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCacac                                                                           >  2:295405/1‑137 (MQ=255)                                                              ccccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCt                                                                       >  2:1387960/1‑140 (MQ=255)                                                               cccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTg                                                                      <  1:1387960/140‑1 (MQ=255)                                                                 cccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGtt                                                                    <  1:352304/140‑1 (MQ=255)                                                                 cccTTCCTTATTCATTTGAACCGTGCCGCCATTCTCCAGGTCACCGACGATAGTGGTTTTAGCGACACGC‑AGTG‑CCCACCCCAAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACCTCACACCGCTGtt                                                                    <  2:1388743/140‑1 (MQ=255)                                                                   cTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAt                                                                  <  2:165113/140‑1 (MQ=255)                                                                   cTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAt                                                                  <  2:1186133/140‑1 (MQ=255)                                                                   cTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAt                                                                  <  1:968798/140‑1 (MQ=255)                                                                   cTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAt                                                                  <  1:1148956/140‑1 (MQ=255)                                                                   cTTCGCTATTCATTTGAACCGTGCCCCCATTCTCCAGGTTGGCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGGCATTTCCCGACATCACACCGCTGTTAt                                                                  <  2:1187028/140‑1 (MQ=255)                                                                      cGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGa                                                               <  2:854254/140‑1 (MQ=255)                                                                      cGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGa                                                               <  1:295843/140‑1 (MQ=255)                                                                           ttCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTa                                                          <  1:1396407/140‑1 (MQ=255)                                                                             cATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAAt                                                        <  2:32210/140‑1 (MQ=255)                                                                              aTTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAAtg                                                       >  2:284717/1‑140 (MQ=255)                                                                                    aCCGTGCCGCCATTCTCCAGGTTTCCGCCGATAGTGGGTTTAGCGACCCGCAATTC‑CCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGa                                                 <  2:121915/140‑1 (MQ=255)                                                                                     ccGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGAc                                                >  1:629050/1‑140 (MQ=255)                                                                                     ccGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGAc                                                >  1:1162337/1‑140 (MQ=255)                                                                                     ccGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGAc                                                <  1:238727/140‑1 (MQ=255)                                                                                        tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTg                                             >  1:1396499/1‑140 (MQ=255)                                                                                        tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTg                                             >  1:1025809/1‑140 (MQ=255)                                                                                        tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGCTATGGATATTAATGTGTTGACTTg                                             >  2:24231/1‑140 (MQ=255)                                                                                         gccgccATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACCCGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGc                                            <  2:1287899/140‑1 (MQ=255)                                                                                         gccgccATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACTGCTGTTATGGATATTAATGTGTTGACTTGc                                            <  1:588506/140‑1 (MQ=255)                                                                                                     cAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGc                                <  2:1162337/140‑1 (MQ=255)                                                                                                      aGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCa                               <  1:948750/140‑1 (MQ=255)                                                                                                             cgccgATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCgg                        >  2:785387/1‑140 (MQ=255)                                                                                                             cgccgATAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCgg                        >  1:873035/1‑140 (MQ=255)                                                                                                                  aTAGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCg                   >  2:701187/1‑140 (MQ=255)                                                                                                                    aGTGGTTTTAGCGACACGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGaa                 <  1:882102/140‑1 (MQ=255)                                                                                                                                   acGC‑AGTGCCCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTccccccc  >  2:624449/1‑140 (MQ=255)                                                                                                                                            |                                                                                                                                     ACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGC‑AGTG‑CCC‑CCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCC  >  NC_000913/1593987‑1594255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑