Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,742,316 T→C T73A (ACC→GCC)  yiaJ ← DNA‑binding transcriptional repressor YiaJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,742,3160TC100.0% 411.7 / NA 114T73A (ACC→GCC) yiaJDNA‑binding transcriptional repressor YiaJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (54/60);  total (54/60)

Only 100 of 118 total aligned reads displayed.

TTCACCAGTGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGTCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAACCCGC  >  NC_000913/3742182‑3742450
                                                                                                                                      |                                                                                                                                      
ttCACCAGTGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACAt                                                                                                                                   >  2:1146657/1‑140 (MQ=255)
ttCACCAGTGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACAt                                                                                                                                   <  2:531513/140‑1 (MQ=255)
 tCACCAGTGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATa                                                                                                                                  >  2:175955/1‑140 (MQ=255)
 tCACCAGTGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATa                                                                                                                                  >  2:1225119/1‑140 (MQ=255)
  cACCAGTGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAg                                                                                                                                 >  1:254420/1‑140 (MQ=255)
  cACCAGTGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAg                                                                                                                                 >  1:1108082/1‑140 (MQ=255)
   aCCAGTGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGc                                                                                                                                <  1:1332204/140‑1 (MQ=255)
     cAGTGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCg                                                                                                                              <  1:1258600/140‑1 (MQ=255)
       gTGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCa                                                                                                                            <  2:580709/140‑1 (MQ=255)
        tGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAg                                                                                                                           <  2:976936/140‑1 (MQ=255)
        tGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAg                                                                                                                           <  1:1035400/140‑1 (MQ=255)
        tGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAg                                                                                                                           >  2:498533/1‑140 (MQ=255)
        tGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAg                                                                                                                           >  2:805132/1‑140 (MQ=255)
        tGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAg                                                                                                                           <  1:203123/140‑1 (MQ=255)
             aTGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTg                                                                                                                      >  2:1274120/1‑140 (MQ=255)
              tGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGATTGt                                                                                                                     <  2:743167/140‑1 (MQ=255)
               gTTGAGTGCATCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGTACGACGGCAATAAATTTGGTGGTCAGGCGATACCTCCCTGCGGCAGGCGCGGTCGCCACATAGCCGCAGGACTGTa                                                                                                                    <  2:479422/140‑1 (MQ=255)
                   aGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCa                                                                                                                            <  2:110367/128‑1 (MQ=255)
                   aGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATcc                                                                                                                <  2:159285/140‑1 (MQ=255)
                   aGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATcc                                                                                                                >  2:368740/1‑140 (MQ=255)
                    gTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCTCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATccc                                                                                                               >  1:109971/1‑140 (MQ=255)
                    gTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATccc                                                                                                               >  2:437304/1‑140 (MQ=255)
                    gTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATccc                                                                                                               <  2:7605/140‑1 (MQ=255)
                     tGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCt                                                                                                              >  1:696345/1‑140 (MQ=255)
                       ccTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGc                                                                                                            >  2:245261/1‑140 (MQ=255)
                        cTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCa                                                                                                           >  1:584963/1‑140 (MQ=255)
                         tCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATc                                                                                                                 <  1:833466/133‑1 (MQ=255)
                          cAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAAt                                                                                                         >  2:176108/1‑140 (MQ=255)
                               tGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCg                                                                                                    <  1:1225119/140‑1 (MQ=255)
                               tGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCACAGGACTGTAATCCCTGCAATAAGCg                                                                                                    >  1:460380/1‑140 (MQ=255)
                                 cGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCAGATAGCCGCAGGACTGTAATCCCTGCAATAAGCGAt                                                                                                  >  2:963022/1‑140 (MQ=255)
                                 cGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGAt                                                                                                  >  1:57169/1‑140 (MQ=255)
                                 cGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGAt                                                                                                  >  2:419603/1‑140 (MQ=255)
                                 cGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGAt                                                                                                  >  2:488909/1‑140 (MQ=255)
                                 cGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGAt                                                                                                  <  1:814835/140‑1 (MQ=255)
                                  ggAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATg                                                                                                 <  1:562971/140‑1 (MQ=255)
                                  ggAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATg                                                                                                 <  1:247297/140‑1 (MQ=255)
                                   gAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATgg                                                                                                >  2:1004905/1‑140 (MQ=255)
                                    aGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGa                                                                                               <  1:498533/140‑1 (MQ=255)
                                    aGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGa                                                                                               <  1:368740/140‑1 (MQ=255)
                                    aGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGa                                                                                               >  1:678648/1‑140 (MQ=255)
                                    aGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGa                                                                                               <  1:1058657/140‑1 (MQ=255)
                                    aGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGa                                                                                               <  1:1356315/140‑1 (MQ=255)
                                    aGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGa                                                                                               <  1:854173/140‑1 (MQ=255)
                                    aGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGa                                                                                               <  2:1182100/140‑1 (MQ=255)
                                      cggcgATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACg                                                                                             >  2:681178/1‑140 (MQ=255)
                                       ggcgATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGa                                                                                               <  2:588122/137‑1 (MQ=255)
                                       ggcgATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACgg                                                                                            <  2:72385/140‑1 (MQ=255)
                                        gcgATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCGGGACTGTAATCCCTGCAATAAGCGATGGACg                                                                                             <  1:225539/138‑1 (MQ=255)
                                        gcgATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCGGGACTGTAATCCCTGCAATAAGCGATGGACg                                                                                             >  2:225539/1‑138 (MQ=255)
                                           atatGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTAct                                                                                        <  1:1004905/140‑1 (MQ=255)
                                           atatGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTAct                                                                                        <  1:419603/140‑1 (MQ=255)
                                            tatGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTActc                                                                                       <  1:176108/140‑1 (MQ=255)
                                                aatgaTATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGa                                                                                               >  1:664342/1‑128 (MQ=255)
                                                aatgaTATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGa                                                                                               <  2:664342/128‑1 (MQ=255)
                                                      atTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAAc                                                                             >  2:1147560/1‑140 (MQ=255)
                                                       ttCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTActc                                                                                       <  1:1301186/129‑1 (MQ=255)
                                                       ttCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTActc                                                                                       >  2:1301186/1‑129 (MQ=255)
                                                        tCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAAcca                                                                           >  1:1084074/1‑140 (MQ=255)
                                                          aGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAAccagc                                                                         >  2:545493/1‑140 (MQ=255)
                                                          aGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAAccagc                                                                         <  2:336201/140‑1 (MQ=255)
                                                          aGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAAccagc                                                                         <  1:437304/140‑1 (MQ=255)
                                                           gCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAAccagcc                                                                        <  1:807599/140‑1 (MQ=255)
                                                            cGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAAccagcca                                                                       <  2:893486/140‑1 (MQ=255)
                                                            cGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAAccagcca                                                                       <  2:348982/140‑1 (MQ=255)
                                                               aGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCt                                                                    >  1:411416/1‑140 (MQ=255)
                                                                 aCAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTcc                                                                  >  1:213931/1‑140 (MQ=255)
                                                                 aCAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTcc                                                                  >  2:58063/1‑140 (MQ=255)
                                                                  cAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCg                                                                 <  2:1049281/140‑1 (MQ=255)
                                                                    gcgcCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGaa                                                               >  2:124129/1‑140 (MQ=255)
                                                                         ttCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATg                                                          <  1:1146657/140‑1 (MQ=255)
                                                                            tGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAAccagc                                                                         >  2:647117/1‑122 (MQ=255)
                                                                            tGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAAccagc                                                                         <  1:647117/122‑1 (MQ=255)
                                                                                  aCGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACgg                                                 >  1:949156/1‑140 (MQ=255)
                                                                                  aCGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACgg                                                 >  2:759068/1‑140 (MQ=255)
                                                                                  aCGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATACCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACgg                                                 >  2:1020791/1‑140 (MQ=255)
                                                                                     gCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTCCTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACa                                              <  1:58063/140‑1 (MQ=255)
                                                                                     gCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACa                                              <  2:696345/140‑1 (MQ=255)
                                                                                        aTAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAAcc                                           <  2:142209/140‑1 (MQ=255)
                                                                                                ggtggtCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACa                                              <  2:496223/129‑1 (MQ=255)
                                                                                                ggtggtCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACa                                              >  1:496223/1‑129 (MQ=255)
                                                                                                     tCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTg                              <  1:124129/140‑1 (MQ=255)
                                                                                                         gCGATAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCa                          <  1:175955/140‑1 (MQ=255)
                                                                                                             tAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAAt                      <  2:254420/140‑1 (MQ=255)
                                                                                                             tAACTCCCTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAAt                      <  1:963022/140‑1 (MQ=255)
                                                                                                                   ccTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAAt                <  1:1020791/140‑1 (MQ=255)
                                                                                                                   ccTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAAt                <  2:411416/140‑1 (MQ=255)
                                                                                                                   ccTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAAt                <  2:1107686/140‑1 (MQ=255)
                                                                                                                   ccTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAAt                <  2:1084074/140‑1 (MQ=255)
                                                                                                                   ccTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAAt                <  1:681178/140‑1 (MQ=255)
                                                                                                                   ccTGCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAAt                <  1:245261/140‑1 (MQ=255)
                                                                                                                      gCGGCAGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAg             >  2:1126245/1‑140 (MQ=255)
                                                                                                                           aGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAAt                >  2:657604/1‑132 (MQ=255)
                                                                                                                           aGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAAt                <  1:657604/132‑1 (MQ=255)
                                                                                                                           aGGCGCGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCa        <  1:1147560/140‑1 (MQ=255)
                                                                                                                             gcgcGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAAc      >  2:1262170/1‑140 (MQ=255)
                                                                                                                             gcgcGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAAc      >  2:960544/1‑140 (MQ=255)
                                                                                                                             gcgcGGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAAc      >  2:980086/1‑140 (MQ=255)
                                                                                                                               gcgGTGGCCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAAccc    <  1:805132/140‑1 (MQ=255)
                                                                                                                                 ggtggcCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAACCcgc  <  2:179280/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                      
TTCACCAGTGGCGATGTTCAGTGCCTCAAGATGCGGAGCGGCGATATGAATGATATTCAGCGAAGACAGCGCCTTCTGCCCGACGGCAATAAATTTGGTGGTCAGGCGATAACTCCCTGCGGCAGGCGCGGTGGTCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAACCCGC  >  NC_000913/3742182‑3742450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑