Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,529,157 A→T V340V (GTT→GTA ligA ← DNA ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,529,1570AT100.0% 206.2 / NA 58V340V (GTT→GTAligADNA ligase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (36/22);  total (36/22)

CGGGATCACGTCGCCAGCGCGGCGAATCACCACTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCAACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCT  >  NC_000913/2529022‑2529290
                                                                                                                                       |                                                                                                                                     
cGGGATCACGTCGCCAGCGCGGCGAATCACCACTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAg                                                                                                                                   >  2:854131/1‑140 (MQ=255)
         gTCGCCAGCGCGGCGAATCACCACTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATcg                                                                                                                          >  1:411273/1‑140 (MQ=255)
             ccAGCGCGGCGAATCACCACTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGcc                                                                                                                      >  1:1000958/1‑140 (MQ=255)
                gcgcGGCGAATCACCACTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGt                                                                                                                   >  2:388803/1‑140 (MQ=255)
                 cgcgGCGAATCACCACTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCGGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTa                                                                                                                  >  2:883835/1‑140 (MQ=255)
                     gcgAATCACCACTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGcc                                                                                                              <  2:1007131/140‑1 (MQ=255)
                                  ttATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTc                                                                                                 >  1:1208159/1‑140 (MQ=255)
                                     tCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGAc                                                                                              <  1:1195943/140‑1 (MQ=255)
                                      cGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACg                                                                                             >  2:799490/1‑140 (MQ=255)
                                         cAATGCTTAATCCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCATCATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACTCCCACCGTAAAGCTCGACGTCa                                                                                          <  2:402248/140‑1 (MQ=255)
                                         cAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCa                                                                                          <  2:1335684/140‑1 (MQ=255)
                                         cAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCa                                                                                          <  2:1208159/140‑1 (MQ=255)
                                             gCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGca                                                                                      <  1:368835/140‑1 (MQ=255)
                                                   aCCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAgg                                                                                >  1:798769/1‑140 (MQ=255)
                                                      aaGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCa                                                                             >  1:308666/1‑140 (MQ=255)
                                                        gACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATc                                                                           >  2:1256287/1‑140 (MQ=255)
                                                             tCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTc                                                                      >  1:267648/1‑140 (MQ=255)
                                                                    cATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGcc                                                               <  1:1102210/140‑1 (MQ=255)
                                                                      tCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCgg                                                             >  2:485132/1‑140 (MQ=255)
                                                                             tgtgTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTa                                                      >  1:79196/1‑140 (MQ=255)
                                                                                    ggTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTa                                               >  2:1340619/1‑140 (MQ=255)
                                                                                      ttGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTAcc                                             >  1:1024141/1‑140 (MQ=255)
                                                                                      ttGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTAcc                                             >  1:879066/1‑140 (MQ=255)
                                                                                        gCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGc                                           <  2:308666/140‑1 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTaaa                                                    >  2:327585/1‑130 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTaaa                                                    <  1:327585/130‑1 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  2:182977/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  2:254678/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  2:78486/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  2:1143698/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  2:1026640/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  1:1022193/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  1:911114/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  1:267935/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  1:271900/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  1:262844/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  1:606052/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  1:873701/1‑140 (MQ=255)
                                                                                         cGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  1:1102254/1‑140 (MQ=255)
                                                                                           ttACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          >  2:632606/1‑138 (MQ=255)
                                                                                           ttACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGcc                                          <  1:632606/138‑1 (MQ=255)
                                                                                                  ccAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAATGCTACCGCCCAGCGCggg                                 <  1:854131/140‑1 (MQ=255)
                                                                                                     gCACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCa                              <  2:271900/140‑1 (MQ=255)
                                                                                                      cACGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCAc                             >  2:607838/1‑140 (MQ=255)
                                                                                                        cGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCAcgc                           <  2:267648/140‑1 (MQ=255)
                                                                                                        cGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCAcgc                           <  1:388803/140‑1 (MQ=255)
                                                                                                        cGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCAcg                            <  2:495282/139‑1 (MQ=255)
                                                                                                        cGCCTGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCAcg                            >  1:495282/1‑139 (MQ=255)
                                                                                                            tGCAACATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGa                       <  1:883835/140‑1 (MQ=255)
                                                                                                                 cATGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAg                  <  1:1256287/140‑1 (MQ=255)
                                                                                                                   tGGACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGcc                >  2:117842/1‑140 (MQ=255)
                                                                                                                     gACAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCaa              >  1:767839/1‑140 (MQ=255)
                                                                                                                      aCAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCGCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAg             <  2:1392428/140‑1 (MQ=255)
                                                                                                                       cAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAgc            >  2:500567/1‑140 (MQ=255)
                                                                                                                       cAGGTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAgc            <  2:798769/140‑1 (MQ=255)
                                                                                                                          gTTCCAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAgctgc         >  2:941338/1‑140 (MQ=255)
                                                                                                                             ccAGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTcc      <  1:182977/140‑1 (MQ=255)
                                                                                                                               ggACGCGCTACAGGCGTAATCGCGCCAGTGCGCCCAGCCTGAAGCTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTGCCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCctg    <  2:74765/139‑1 (MQ=255)
                                                                                                                               aGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCctg    <  2:411273/140‑1 (MQ=255)
                                                                                                                               aGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCctg    <  2:262844/140‑1 (MQ=255)
                                                                                                                               aGACGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCctg    <  1:1340619/140‑1 (MQ=255)
                                                                                                                                 aCGCGCTACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCctgct  <  1:78486/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                     
CGGGATCACGTCGCCAGCGCGGCGAATCACCACTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCAACAGGCGTAATCGCGCCAGTACGCCCAACCTGAAACTCGACGTCACGCACAAAGGTCATCTGCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCT  >  NC_000913/2529022‑2529290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: