| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,420,807 | +C | coding (124/423 nt) | ydaT → | Rac prophage; protein YdaT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,420,803 | 1 | . | C | 98.2% | 202.6 / ‑3.2 | 55 | coding (120/423 nt) | ydaT | Rac prophage; protein YdaT |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (26/28); total (27/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 | |||||||||||
CATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑G‑CCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCT > NC_000913/1420664‑1420937 | cATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑g < 1:334382/140‑1 (MQ=255) tCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑G‑cc > 2:1212509/1‑140 (MQ=255) cAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑G‑ccc > 1:179099/1‑140 (MQ=255) aaGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑G‑cccc < 2:914490/140‑1 (MQ=255) aaGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑G‑cccc > 1:1171404/1‑140 (MQ=255) aaaTGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAGTATCTGCGCCAGGGGGGTGGCGAATT‑GCCCCCTGGTTc > 2:269112/1‑140 (MQ=255) aTTCATGAAAATCAAGCATGATCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGc > 2:119780/1‑140 (MQ=255) aTTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGc < 2:1237609/140‑1 (MQ=255) ttCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCa < 2:132613/140‑1 (MQ=255) ttCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCa < 1:379310/140‑1 (MQ=255) tCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCaa > 1:190271/1‑140 (MQ=255) aTGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTcc < 2:351415/132‑1 (MQ=255) aTGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTcc > 1:351415/1‑132 (MQ=255) aaaTCAAGCATGATCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTg < 1:119780/140‑1 (MQ=255) gCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTTCTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAAt < 2:483646/140‑1 (MQ=255) gCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAAt < 2:544831/140‑1 (MQ=255) tGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATcag < 2:1231832/140‑1 (MQ=255) aGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATcagca < 2:1268726/140‑1 (MQ=255) aGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGATTCCAGGCAAGGACTGGAACAATcagca > 1:968334/1‑140 (MQ=255) gCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCC‑ATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGa > 1:40409/1‑140 (MQ=255) cacaTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGa < 1:765860/140‑1 (MQ=255) cacaTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGa < 2:1171404/140‑1 (MQ=255) cacaTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGa < 2:179099/140‑1 (MQ=255) caTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAat < 1:95851/140‑1 (MQ=255) aTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAata < 1:227280/140‑1 (MQ=255) tCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAatat > 2:1261341/1‑140 (MQ=255) tCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAAtatctatc < 1:532637/140‑1 (MQ=255) aGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCAc > 1:899389/1‑140 (MQ=255) aGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCAc < 1:1068498/140‑1 (MQ=255) aGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCAc < 1:564677/140‑1 (MQ=255) gttTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATcagcagg < 1:77160/123‑2 (MQ=255) gttTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATcagcagg > 2:77160/1‑122 (MQ=255) tttGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgttggt > 2:877519/1‑140 (MQ=255) cGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACg > 1:378294/1‑140 (MQ=255) aaaaaGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAGTATCTGCGCCAGGGGGGTGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGaa < 1:269112/140‑1 (MQ=255) gcaggcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCaa > 2:436423/1‑140 (MQ=255) gcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAagag > 1:777052/1‑140 (MQ=255) gcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAagag > 2:425107/1‑140 (MQ=255) aGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAAtt < 2:1243683/140‑1 (MQ=255) gCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTc < 1:1119780/140‑1 (MQ=255) ccAATGCAATTACTGNAGAATANCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCa > 1:659167/1‑140 (MQ=255) tGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAg > 1:460692/1‑140 (MQ=255) tGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAg < 2:40409/140‑1 (MQ=255) gaaTATCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCaa < 1:1261341/140‑1 (MQ=255) atatCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAAtt > 1:858987/1‑140 (MQ=255) atCTGCGCCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCt < 1:877519/140‑1 (MQ=255) gcgcCAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCa > 1:827138/1‑140 (MQ=255) ccAGGGGGGCGGCGAATTAC‑CCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATc > 1:397080/1‑140 (MQ=255) ccAGGGGGGCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATc > 2:796453/1‑140 (MQ=255) ccAGGGGGGCGGCGAATT‑GCCCCCTGGCTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCaa < 1:617518/129‑1 (MQ=255) ccAGGGGGGCGGCGAATT‑GCCCCCTGGCTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCaa > 2:617518/1‑129 (MQ=255) ggggggCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCtt > 2:65269/1‑140 (MQ=255) gggggCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTc > 2:1279062/1‑140 (MQ=255) gggggCGGCGAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTc > 2:1040342/1‑140 (MQ=255) cggcgAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCcg > 2:520911/1‑137 (MQ=255) cggcgAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCcg < 1:520911/137‑1 (MQ=255) gcgAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGa > 1:199338/1‑140 (MQ=255) gcgAATT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGa > 2:219329/1‑140 (MQ=255) aaTT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCt < 2:827138/140‑1 (MQ=255) aaTT‑GCCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCt < 1:436423/140‑1 (MQ=255) | CATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGCGGCGAATT‑G‑CCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAGCTGATCCCAGCAATTCTGGCAATCCTTCCGCGCGAGCT > NC_000913/1420664‑1420937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |