BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,188,180	T→C	pseudogene (749/2434 nt)	yqiG →	putative outer membrane usher protein YqiG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,188,180	0	T	C	100.0%	394.4 / NA	106	pseudogene (749/2434 nt)	yqiG	putative outer membrane usher protein YqiG
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (46/60); total (46/60)

Only 100 of 106 total aligned reads displayed.

TCCGCGTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTA  >  NC_000913/3188047‑3188309

tCCGCGTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGc                                                                                                                             >  2:1013395/1‑140 (MQ=255)

 ccGCGTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGcc                                                                                                                            >  2:969129/1‑140 (MQ=255)

  cgcgTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGGATTTCGTTGAAAACCGCTGAGAATATGCTACCGCCa                                                                                                                           <  2:1262515/140‑1 (MQ=255)

  cgcgTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACCATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCa                                                                                                                           >  1:397106/1‑140 (MQ=255)

   gcgTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAg                                                                                                                          <  2:703839/140‑1 (MQ=255)

   gcgTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAg                                                                                                                          <  1:1278162/140‑1 (MQ=255)

   gcgTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAg                                                                                                                          <  1:929847/140‑1 (MQ=255)

          tatttGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACg                                                                                                                   <  1:743011/140‑1 (MQ=255)

          tatttGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACg                                                                                                                   <  2:922610/140‑1 (MQ=255)

                 ttCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTAc                                                                                                            >  1:333755/1‑140 (MQ=255)

                  tCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACg                                                                                                           <  2:187569/140‑1 (MQ=255)

                  tCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACg                                                                                                           >  1:1273540/1‑140 (MQ=255)

                  tCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACg                                                                                                           <  1:212482/140‑1 (MQ=255)

                  tCGCCCAATCCCAGCAATGAACGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACg                                                                                                           <  2:1166827/140‑1 (MQ=255)

                   cGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGc                                                                                                          >  1:756229/1‑140 (MQ=255)

                   cGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGc                                                                                                          >  1:267476/1‑140 (MQ=255)

                         aTCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCa                                                                                                    >  1:302740/1‑140 (MQ=255)

                               gCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCAc                                                                                              >  1:214442/1‑140 (MQ=255)

                               gCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCAc                                                                                              <  1:681683/140‑1 (MQ=255)

                                   tgaatgCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGgt                                                                                          >  2:319204/1‑140 (MQ=255)

                                    gaatgCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGgtg                                                                                         >  1:1220849/1‑140 (MQ=255)

                                     aatgCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGgtgt                                                                                        >  1:735068/1‑140 (MQ=255)

                                     aatgCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGgtgt                                                                                        >  2:717781/1‑140 (MQ=255)

                                      atgCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTc                                                                                       <  2:1022283/140‑1 (MQ=255)

                                         cAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGca                                                                                    >  1:365075/1‑140 (MQ=255)

                                         cAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGca                                                                                    <  2:333755/140‑1 (MQ=255)

                                           aaaCTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGcaca                                                                                  <  1:791272/140‑1 (MQ=255)

                                           aaaCTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGcaca                                                                                  <  1:969129/140‑1 (MQ=255)

                                           aaaCTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGcaca                                                                                  <  1:122643/140‑1 (MQ=255)

                                           aaaCTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGcaca                                                                                  <  1:717781/140‑1 (MQ=255)

                                           aaaCTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGcaca                                                                                  <  2:1116094/140‑1 (MQ=255)

                                                     taGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCa                                                                        <  2:92334/140‑1 (MQ=255)

                                                     taGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCa                                                                        <  2:83153/140‑1 (MQ=255)

                                                     taGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCa                                                                        <  1:652153/140‑1 (MQ=255)

                                                      aGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCaa                                                                       >  2:378143/1‑140 (MQ=255)

                                                        gTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAg                                                                     >  1:435155/1‑140 (MQ=255)

                                                         tCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAAt                                                                           <  2:1268571/133‑1 (MQ=255)

                                                         tCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAAt                                                                           >  1:1268571/1‑133 (MQ=255)

                                                         tCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAgg                                                                    >  1:830192/1‑140 (MQ=255)

                                                          cAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGt                                                                   <  2:1220849/140‑1 (MQ=255)

                                                          cAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGt                                                                   <  1:124806/140‑1 (MQ=255)

                                                          cAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGt                                                                   <  2:214442/140‑1 (MQ=255)

                                                            aTACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCa                                                                 <  2:1155123/140‑1 (MQ=255)

                                                            aTACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCa                                                                 <  2:393486/140‑1 (MQ=255)

                                                             tACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCAc                                                                >  1:1106245/1‑140 (MQ=255)

                                                             tACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAAACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCAc                                                                >  1:1083522/1‑140 (MQ=255)

                                                              aCGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACt                                                               <  1:484710/140‑1 (MQ=255)

                                                              aCGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACt                                                               <  1:73162/140‑1 (MQ=255)

                                                              aCGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACt                                                               <  1:279141/140‑1 (MQ=255)

                                                                gATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAAACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGt                                                             <  2:1083522/140‑1 (MQ=255)

                                                                  tACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGtct                                                           >  1:70701/1‑140 (MQ=255)

                                                                  tACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGtct                                                           >  2:1228215/1‑140 (MQ=255)

                                                                  tACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGtct                                                           >  2:888300/1‑140 (MQ=255)

                                                                   aCTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGtctc                                                          >  2:810004/1‑140 (MQ=255)

                                                                       aaTCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAg                                                      >  2:1175040/1‑140 (MQ=255)

                                                                       aaTCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAg                                                      >  2:947281/1‑140 (MQ=255)

                                                                       aaTCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAg                                                      >  2:206506/1‑140 (MQ=255)

                                                                       aaTCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAg                                                      >  2:1246925/1‑140 (MQ=255)

                                                                       aaTCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAg                                                      >  2:1263740/1‑140 (MQ=255)

                                                                       aaTCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAg                                                      >  1:829481/1‑140 (MQ=255)

                                                                       aaTCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAg                                                      <  1:380434/140‑1 (MQ=255)

                                                                       aaTCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAg                                                      >  1:41687/1‑140 (MQ=255)

                                                                         tCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaa                                                    <  2:830192/140‑1 (MQ=255)

                                                                         tCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaa                                                    <  1:1066826/140‑1 (MQ=255)

                                                                         tCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaa                                                    <  1:1013395/140‑1 (MQ=255)

                                                                         tCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaa                                                    <  1:810004/140‑1 (MQ=255)

                                                                          ccTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaac                                                   <  1:1241334/140‑1 (MQ=255)

                                                                          ccTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaac                                                   <  1:1246925/140‑1 (MQ=255)

                                                                          ccTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaac                                                   <  1:206506/140‑1 (MQ=255)

                                                                          ccTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaac                                                   <  2:267476/140‑1 (MQ=255)

                                                                           ctctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaaca                                                  <  2:1273540/140‑1 (MQ=255)

                                                                            tctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaacaa                                                 >  1:629152/1‑140 (MQ=255)

                                                                            tctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaacaa                                                 >  2:284519/1‑140 (MQ=255)

                                                                            tctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaacaa                                                 <  2:41687/140‑1 (MQ=255)

                                                                            tctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaacaa                                                 >  1:400705/1‑140 (MQ=255)

                                                                            tctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaac                                                   >  2:1089672/1‑138 (MQ=255)

                                                                            tctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaac                                                   <  1:1089672/138‑1 (MQ=255)

                                                                            tctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaac                                                   >  2:446737/1‑138 (MQ=255)

                                                                            tctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaa                                                    >  1:1230500/1‑137 (MQ=255)

                                                                            tctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaa                                                    <  1:328290/137‑1 (MQ=255)

                                                                            tctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaa                                                    >  2:328290/1‑137 (MQ=255)

                                                                            tctATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaa                                                    <  2:1230500/137‑1 (MQ=255)

                                                                              tATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaac                                                   >  2:926008/1‑136 (MQ=255)

                                                                              tATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGaac                                                   <  1:926008/136‑1 (MQ=255)

                                                                               aTTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCg                                              <  2:735068/140‑1 (MQ=255)

                                                                                 tttCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGta                                            >  1:1152656/1‑140 (MQ=255)

                                                                                     gACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCATAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGtattat                                        >  2:1188687/1‑140 (MQ=255)

                                                                                          tttCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATc                                   >  2:309134/1‑140 (MQ=255)

                                                                                            tCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCaa                                 >  2:109242/1‑140 (MQ=255)

                                                                                              cATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGa                               <  2:783581/140‑1 (MQ=255)

                                                                                                tttttCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGaaa                             >  1:473622/1‑140 (MQ=255)

                                                                                                   ttCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATg                          <  1:264866/140‑1 (MQ=255)

                                                                                                    tCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGt                         <  1:1188687/140‑1 (MQ=255)

                                                                                                    tCTGGCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGt                         <  1:319204/140‑1 (MQ=255)

                                                                                                        gCATTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtcct                     <  1:709310/140‑1 (MQ=255)

                                                                                                          aTTTCGTTGAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtcctcc                   <  2:365075/140‑1 (MQ=255)

                                                                                                                  gAAAAGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCAt           <  1:309134/140‑1 (MQ=255)

                                                                                                                   aaaaGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCAtt          <  2:70701/140‑1 (MQ=255)

                                                                                                                     aaGCGATGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTGCCTCCAGGCCCATTTg        <  2:1106910/140‑1 (MQ=255)

                                                                                                                           tGAGAATATGCTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTa  <  1:109242/140‑1 (MQ=255)

TCCGCGTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTATAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTA  >  NC_000913/3188047‑3188309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`