Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,377,428	T→C	intergenic (‑8/+387)	sspA ← / ← rpsI	stringent starvation protein A/30S ribosomal subunit protein S9

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,377,428	0	T	C	100.0%	276.2 / NA	73	intergenic (‑8/+387)	sspA/rpsI	stringent starvation protein A/30S ribosomal subunit protein S9
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (32/41);  total (32/41)

TTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAA  >  NC_000913/3377295‑3377561                                                                                                                                      |                                                                                                                                      ttCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGt                                                                                                                                 >  1:740320/1‑140 (MQ=255)  tCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGta                                                                                                                                >  1:230913/1‑140 (MQ=255)         gtTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAg                                                                                                                         >  1:385317/1‑140 (MQ=255)              aTCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAAttt                                                                                                                    >  2:686483/1‑140 (MQ=255)                  cGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTAc                                                                                                                <  2:703226/140‑1 (MQ=255)                  cGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTAc                                                                                                                <  1:1207666/140‑1 (MQ=255)                   gAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACt                                                                                                               >  1:1191592/1‑140 (MQ=255)                        ttACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTAc                                                                                                          <  2:740320/140‑1 (MQ=255)                        ttACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTAc                                                                                                          <  1:863478/140‑1 (MQ=255)                        ttACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTAc                                                                                                          <  2:981800/140‑1 (MQ=255)                         tACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTAcc                                                                                                         <  2:329084/140‑1 (MQ=255)                             ccTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGcc                                                                                                     <  2:385317/140‑1 (MQ=255)                                 tctcAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTAc                                                                                                          <  2:322469/131‑1 (MQ=255)                                 tctcAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTAc                                                                                                          >  1:322469/1‑131 (MQ=255)                                 tctcAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGccacca                                                                                                 >  1:714175/1‑140 (MQ=255)                                  ctcAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCAAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAg                                                                                                >  2:460000/1‑140 (MQ=255)                                      gccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTgg                                                                                            <  1:824711/140‑1 (MQ=255)                                       ccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGTAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGc                                                                                           <  2:1191592/140‑1 (MQ=255)                                       ccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCAAGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGc                                                                                           <  2:734000/140‑1 (MQ=255)                                           cacaATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGc                                                                                           <  1:143004/136‑1 (MQ=255)                                           cacaATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGc                                                                                           >  2:143004/1‑136 (MQ=255)                                           cacaATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGt                                                                                       >  2:583086/1‑140 (MQ=255)                                            acaATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTc                                                                                      <  2:1059815/140‑1 (MQ=255)                                               aTGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGc                                                                                           >  2:853687/1‑132 (MQ=255)                                               aTGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGc                                                                                           <  1:853687/132‑1 (MQ=255)                                                tGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGaa                                                                                  >  1:772223/1‑140 (MQ=255)                                                tGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGaa                                                                                  >  1:823978/1‑140 (MQ=255)                                                 gCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAg                                                                                 >  2:161799/1‑140 (MQ=255)                                                 gCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAg                                                                                 <  2:714175/140‑1 (MQ=255)                                                 gCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAg                                                                                 <  1:245652/140‑1 (MQ=255)                                                 gCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAg                                                                                 <  2:617007/140‑1 (MQ=255)                                                 gCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAg                                                                                 >  2:614341/1‑140 (MQ=255)                                                 gCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAg                                                                                 <  2:91127/140‑1 (MQ=255)                                                 gCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTGGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAg                                                                                 >  2:1142667/1‑140 (MQ=255)                                                     aCCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGaa                                                                                  <  2:163649/135‑1 (MQ=255)                                                     aCCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGaa                                                                                  >  1:163649/1‑135 (MQ=255)                                                     aCCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTtgt                                                                             >  2:422267/1‑140 (MQ=255)                                                      ccTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTtgtg                                                                            <  1:1246739/140‑1 (MQ=255)                                                      ccTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTtgtg                                                                            <  2:1040248/140‑1 (MQ=255)                                                      ccTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTtgtg                                                                            <  2:47746/140‑1 (MQ=255)                                                        tGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGtt                                                                          >  1:1248634/1‑140 (MQ=255)                                                        tGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGtt                                                                          <  2:1248634/140‑1 (MQ=255)                                                          aTGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAc                                                                        >  2:591556/1‑140 (MQ=255)                                                          aTGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAc                                                                        >  1:1270112/1‑140 (MQ=255)                                                          aTGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAc                                                                        >  2:13567/1‑140 (MQ=255)                                                           tGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAcc                                                                       <  1:371787/140‑1 (MQ=255)                                                           tGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAcc                                                                       <  2:1242668/140‑1 (MQ=255)                                                               tataGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAAt                                                                   >  1:1054273/1‑140 (MQ=255)                                                                 taGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGa                                                                                   >  2:109717/1‑122 (MQ=255)                                                                 taGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGa                                                                                   <  1:109717/122‑1 (MQ=255)                                                                 taGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATaa                                                                 >  2:1067961/1‑140 (MQ=255)                                                                    aTGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGa                                                              <  1:109411/140‑1 (MQ=255)                                                                     tGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGaa                                                             <  2:134646/140‑1 (MQ=255)                                                                     tGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGaa                                                             <  1:1142667/140‑1 (MQ=255)                                                                     tGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGaa                                                             <  1:161799/140‑1 (MQ=255)                                                                       tCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATa                                                                  >  2:370452/1‑133 (MQ=255)                                                                       tCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATa                                                                  <  1:370452/133‑1 (MQ=255)                                                                         aGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATa                                                                  <  1:572157/131‑1 (MQ=255)                                                                         aGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATa                                                                  >  2:572157/1‑131 (MQ=255)                                                                         aGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGAc                                                         >  1:609816/1‑140 (MQ=255)                                                                               aCCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCtt                                                   <  2:359062/140‑1 (MQ=255)                                                                               aCCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGAGTTACCCAATAAGGAACGACTCTCtt                                                   >  2:316559/1‑140 (MQ=255)                                                                                 cGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTg                                                 >  1:245102/1‑140 (MQ=255)                                                                                   gAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGtt                                               >  2:1148026/1‑140 (MQ=255)                                                                                   gAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGtt                                               >  1:875119/1‑140 (MQ=255)                                                                                                    cGAACGTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACaaaaa                              <  1:422267/140‑1 (MQ=255)                                                                                                         gTTTGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAg                         <  1:583086/140‑1 (MQ=255)                                                                                                          tttGTTGGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGc                        <  1:1067961/140‑1 (MQ=255)                                                                                                            tgttgGCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCaa                      <  1:265091/140‑1 (MQ=255)                                                                                                                 gCAGCGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATAccc                 <  2:230913/140‑1 (MQ=255)                                                                                                                     cGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACa             >  2:1014523/1‑140 (MQ=255)                                                                                                                     cGACAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACa             >  1:615480/1‑140 (MQ=255)                                                                                                                       aCAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACAtt           <  2:245102/140‑1 (MQ=255)                                                                                                                        cAGCCATGAAAACCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACAttt          <  2:1054273/140‑1 (MQ=255)                                                                                                                                aaaaCCCCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGaa  <  1:65801/140‑1 (MQ=255)                                                                                                                                      |                                                                                                                                      TTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAA  >  NC_000913/3377295‑3377561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑