BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,453,124	A→G	pseudogene (1878/2646 nt)	yfcU ←	putative outer membrane usher protein YfcU

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,453,124	0	A	G	100.0%	371.6 / NA	100	pseudogene (1878/2646 nt)	yfcU	putative outer membrane usher protein YfcU
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (63/37); total (63/37)

Only 100 of 102 total aligned reads displayed.

CGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGAGCG  >  NC_000913/2452998‑2453260

cGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGt                                                                                                                             <  1:513747/140‑1 (MQ=255)

cGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGt                                                                                                                             <  1:543993/140‑1 (MQ=255)

    gcgcCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCaa                                                                                                                         >  1:1279988/1‑140 (MQ=255)

     cgccgcCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAAc                                                                                                                        <  2:87004/140‑1 (MQ=255)

      gccgccCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACt                                                                                                                       <  1:933347/140‑1 (MQ=255)

                    aCAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTcgcg                                                                                                         >  2:145255/1‑140 (MQ=255)

                       aGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCa                                                                                                      >  2:539863/1‑140 (MQ=255)

                       aGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCa                                                                                                      >  1:677453/1‑140 (MQ=255)

                         cccGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATc                                                                                                    >  2:154924/1‑140 (MQ=255)

                         cccGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATc                                                                                                    >  2:1276185/1‑140 (MQ=255)

                            gCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGac                                                                                                 <  1:145255/140‑1 (MQ=255)

                              agagGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGacac                                                                                               >  1:1129862/1‑140 (MQ=255)

                                   tgtATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTa                                                                                          >  1:80261/1‑140 (MQ=255)

                                     tATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTaaa                                                                                        >  2:1123980/1‑140 (MQ=255)

                                          cccTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAAc                                                                                   >  1:419006/1‑140 (MQ=255)

                                          cccTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAAc                                                                                   >  2:264918/1‑140 (MQ=255)

                                          cccTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAAc                                                                                   >  2:401465/1‑140 (MQ=255)

                                               cATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCTTCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGAcc                                                                              >  1:47021/1‑140 (MQ=255)

                                               cATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGAcc                                                                              >  2:539994/1‑140 (MQ=255)

                                               cATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGAcc                                                                              >  1:34268/1‑140 (MQ=255)

                                               cATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGAcc                                                                              >  1:1193171/1‑140 (MQ=255)

                                               cATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATAATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGAcc                                                                              <  2:1193171/140‑1 (MQ=255)

                                                       ttCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGgctgct                                                                      >  2:848767/1‑140 (MQ=255)

                                                       ttCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGgctgct                                                                      >  2:349921/1‑140 (MQ=255)

                                                       ttCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGgctgct                                                                      >  2:716879/1‑140 (MQ=255)

                                                       ttCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGgctgct                                                                      >  2:1259109/1‑140 (MQ=255)

                                                         cGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTgt                                                                    >  2:1093236/1‑140 (MQ=255)

                                                           cACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTgtcc                                                                  >  2:1274858/1‑140 (MQ=255)

                                                            aCTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTgtccg                                                                 >  2:274894/1‑140 (MQ=255)

                                                            aCTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTgtccg                                                                 >  1:1129027/1‑140 (MQ=255)

                                                             cTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTGGGGTCACCGCCACGGCTAAAATAACCGACCTGGCTGCTgtccgt                                                                <  2:363117/140‑1 (MQ=255)

                                                               gAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTgtccgtcc                                                              <  1:778073/140‑1 (MQ=255)

                                                               gAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTgtccgtcc                                                              <  1:1276185/140‑1 (MQ=255)

                                                               gAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTgtccgtcc                                                              <  1:539863/140‑1 (MQ=255)

                                                                aGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGgc                                                                          >  1:868524/1‑127 (MQ=255)

                                                                aGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGgc                                                                          <  2:868524/127‑1 (MQ=255)

                                                                aGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTccc                                                             >  2:584012/1‑140 (MQ=255)

                                                                aGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTccc                                                             >  2:41324/1‑140 (MQ=255)

                                                                aGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTccc                                                             >  1:89272/1‑140 (MQ=255)

                                                                  gTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCAc                                                           >  2:381737/1‑140 (MQ=255)

                                                                   tCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACt                                                          <  2:533266/140‑1 (MQ=255)

                                                                     aaCCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGc                                                        >  1:601197/1‑140 (MQ=255)

                                                                     aaCCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGc                                                        >  2:80339/1‑140 (MQ=255)

                                                                     aaCCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGc                                                        >  1:1207445/1‑140 (MQ=255)

                                                                        cTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCAt                                                     >  1:381137/1‑140 (MQ=255)

                                                                          gcgcCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAg                                                   >  1:264507/1‑140 (MQ=255)

                                                                           cgcCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGt                                                  <  1:1093236/140‑1 (MQ=255)

                                                                            gcCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGtt                                                 >  1:718809/1‑140 (MQ=255)

                                                                            gcCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGtt                                                 >  1:47848/1‑140 (MQ=255)

                                                                             ccAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTg                                                <  2:47848/140‑1 (MQ=255)

                                                                             ccAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTg                                                <  1:349921/140‑1 (MQ=255)

                                                                                gCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCg                                             <  1:95903/140‑1 (MQ=255)

                                                                                 cGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTg                                                <  1:738837/136‑1 (MQ=255)

                                                                                 cGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTg                                                >  2:738837/1‑136 (MQ=255)

                                                                                 cGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGt                                            >  2:534507/1‑140 (MQ=255)

                                                                                 cGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGt                                            >  1:471555/1‑140 (MQ=255)

                                                                                        tcatGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCt                                     <  1:584012/140‑1 (MQ=255)

                                                                                        tcatGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCt                                     <  1:654640/140‑1 (MQ=255)

                                                                                        tcatGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCt                                     <  2:1279988/140‑1 (MQ=255)

                                                                                        tcatGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCt                                     <  1:994684/140‑1 (MQ=255)

                                                                                        tcatGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACC‑GGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTtata                                        >  2:84717/1‑136 (MQ=255)

                                                                                        tcatGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACC‑GGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTtata                                        <  1:84717/136‑1 (MQ=255)

                                                                                          atGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTaa                                   <  1:99614/140‑1 (MQ=255)

                                                                                           tGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAAc                                  >  2:274456/1‑140 (MQ=255)

                                                                                           tGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAAc                                  >  2:455153/1‑140 (MQ=255)

                                                                                               tGTAGTAGCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTa                              <  2:419006/140‑1 (MQ=255)

                                                                                                 tagtagCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACt                            >  1:694646/1‑140 (MQ=255)

                                                                                                   gtagCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCt                                     <  1:1199949/129‑1 (MQ=255)

                                                                                                   gtagCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACtgt                          >  2:225631/1‑140 (MQ=255)

                                                                                                   gtagCCATCAACGCTGGTGTGGTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCt                                     >  2:1199949/1‑129 (MQ=255)

                                                                                                      gCCATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACtgttgt                       >  2:1195458/1‑140 (MQ=255)

                                                                                                       ccATCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTc                      >  1:1183330/1‑140 (MQ=255)

                                                                                                         aTCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGc                    >  1:641340/1‑140 (MQ=255)

                                                                                                         aTCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTCGCCGTTATAGCTAACGGTACTGTTGTCGc                    >  1:737949/1‑140 (MQ=255)

                                                                                                          tCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGcc                   <  2:89272/140‑1 (MQ=255)

                                                                                                          tCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGcc                   <  2:718809/140‑1 (MQ=255)

                                                                                                          tCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGcc                   <  1:911879/140‑1 (MQ=255)

                                                                                                          tCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGcc                   <  1:871659/140‑1 (MQ=255)

                                                                                                          tCAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGcc                   <  1:154924/140‑1 (MQ=255)

                                                                                                           cAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGccc                  >  2:905668/1‑140 (MQ=255)

                                                                                                           cAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGccc                  >  1:1121156/1‑140 (MQ=255)

                                                                                                           cAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGccc                  <  2:47021/140‑1 (MQ=255)

                                                                                                           cAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGccc                  >  1:104950/1‑140 (MQ=255)

                                                                                                           cAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGccc                  >  1:756954/1‑140 (MQ=255)

                                                                                                           cAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGccc                  >  1:74061/1‑140 (MQ=255)

                                                                                                           cAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGccc                  <  1:58281/140‑1 (MQ=255)

                                                                                                           cAACGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCCGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGccc                  >  2:594217/1‑140 (MQ=255)

                                                                                                            aaCGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGcccc                 <  1:455153/140‑1 (MQ=255)

                                                                                                            aaCGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGcccc                 <  1:274456/140‑1 (MQ=255)

                                                                                                            aaCGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGcccc                 <  2:1129027/140‑1 (MQ=255)

                                                                                                              cGCTGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCAc               >  1:695066/1‑140 (MQ=255)

                                                                                                                 tGGTGTGTTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGc            >  2:1089872/1‑140 (MQ=255)

                                                                                                                    tgtgtTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATa         <  1:381737/140‑1 (MQ=255)

                                                                                                                      tgtTTGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACt       >  2:533423/1‑140 (MQ=255)

                                                                                                                        tttGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGa     >  2:151277/1‑140 (MQ=255)

                                                                                                                        tttGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGa     >  1:1238708/1‑140 (MQ=255)

                                                                                                                        tttGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGa     >  1:1099755/1‑140 (MQ=255)

                                                                                                                         ttGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGAg    <  2:694646/140‑1 (MQ=255)

                                                                                                                         ttGTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGAg    <  1:41324/140‑1 (MQ=255)

                                                                                                                           gTCGCTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGAGCg  <  1:1259109/140‑1 (MQ=255)

CGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGAGCG  >  NC_000913/2452998‑2453260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`