Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,564,978	G→A	A152A (GCG→GCA)	yffS →	CPZ‑55 prophage; uncharacterized protein YffS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,564,978	0	G	A	100.0%	273.3 / NA	78	A152A (GCG→GCA)	yffS	CPZ‑55 prophage; uncharacterized protein YffS
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (43/35);  total (43/35)

GAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACGCAGGGTTAC  >  NC_000913/2564844‑2565108                                                                                                                                       |                                                                                                                                   gAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCaa                                                                                                                               <  1:319709/140‑1 (MQ=255) gAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCaa                                                                                                                               >  2:1246136/1‑140 (MQ=255) gAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCaa                                                                                                                               >  1:771011/1‑140 (MQ=255) gAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCaa                                                                                                                               >  2:796566/1‑140 (MQ=255) gAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCaa                                                                                                                               >  2:262890/1‑140 (MQ=255) gAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCaa                                                                                                                               <  2:113530/140‑1 (MQ=255)  aaCGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAAc                                                                                                                              >  1:883400/1‑140 (MQ=255)   aCGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACg                                                                                                                             >  2:846438/1‑140 (MQ=255)        aTGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGaa                                                                                                                        >  2:1222410/1‑140 (MQ=255)        aTGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGGGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGaa                                                                                                                        >  1:1177399/1‑140 (MQ=255)            tattatCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAag                                                                                                                    >  1:108341/1‑140 (MQ=255)                 tCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATg                                                                                                               >  2:643025/1‑140 (MQ=255)                   gacgacCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATggg                                                                                                             >  1:1107674/1‑140 (MQ=255)                   gacgacCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATggg                                                                                                             >  1:817391/1‑140 (MQ=255)                     cgacCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAg                                                                                                           >  1:304123/1‑140 (MQ=255)                      gacCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGCGATGGGAGGGGAAAAAGTGGAAGAAGTGGCAGGAGAGCAAACACCCAACGATGCAAAAGAGATGGGAGc                                                                                                          >  2:1015957/1‑140 (MQ=255)                      gacCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGc                                                                                                          >  2:647987/1‑140 (MQ=255)                      gacCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGc                                                                                                          >  1:69457/1‑140 (MQ=255)                       acCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCt                                                                                                         <  2:108341/140‑1 (MQ=255)                        ccTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTa                                                                                                        >  1:302318/1‑140 (MQ=255)                        ccTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTa                                                                                                        <  2:959880/140‑1 (MQ=255)                            aaGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGa                                                                                                    <  1:643025/140‑1 (MQ=255)                            aaGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGa                                                                                                    <  2:566886/140‑1 (MQ=255)                                  cGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGt                                                                                              >  2:486289/1‑140 (MQ=255)                                  cGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGt                                                                                              >  2:740668/1‑140 (MQ=255)                                   gTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGtt                                                                                             <  2:69457/140‑1 (MQ=255)                                   gTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGtt                                                                                             >  1:1082073/1‑140 (MQ=255)                                             gCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTaacccgaacc                                                                                   <  2:661943/140‑1 (MQ=255)                                              cTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTaacccgaaccc                                                                                  >  1:113681/1‑140 (MQ=255)                                                 gAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAAcccgaacccgaa                                                                               >  2:880775/1‑140 (MQ=255)                                                 gAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAAcccgaacccgaa                                                                               >  1:1271591/1‑140 (MQ=255)                                                  aGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGaaa                                                                              >  1:276458/1‑140 (MQ=255)                                                  aGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGaaa                                                                              >  2:595755/1‑140 (MQ=255)                                                       gcACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATa                                                                         <  2:1192999/140‑1 (MQ=255)                                                       gcACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATa                                                                         <  2:883991/140‑1 (MQ=255)                                                        cACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATAc                                                                        >  2:549512/1‑140 (MQ=255)                                                        cACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATAc                                                                        >  1:928418/1‑140 (MQ=255)                                                          cTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAg                                                                      <  2:802686/140‑1 (MQ=255)                                                                    aaCAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAtg                                                            <  1:740668/140‑1 (MQ=255)                                                                    aaCAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAtg                                                            <  2:725220/140‑1 (MQ=255)                                                                    aaCAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAtg                                                            <  2:771011/140‑1 (MQ=255)                                                                    aaCAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAtg                                                            <  1:486289/140‑1 (MQ=255)                                                                      cAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAtgtt                                                          <  2:276458/140‑1 (MQ=255)                                                                          tCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTgtgt                                                      <  2:598448/140‑1 (MQ=255)                                                                              agcagAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAgg                                                  >  1:100/1‑140 (MQ=255)                                                                                  gAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACt                                              <  2:928418/140‑1 (MQ=255)                                                                                   aaGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTg                                             >  1:777495/1‑140 (MQ=255)                                                                                   aaGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTg                                             >  1:1141414/1‑140 (MQ=255)                                                                                    aGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTgg                                            <  1:1246136/140‑1 (MQ=255)                                                                                     gCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGc                                           >  1:683366/1‑140 (MQ=255)                                                                                     gCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGc                                           >  2:587541/1‑140 (MQ=255)                                                                                              aTGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATggg                                  >  1:1011399/1‑140 (MQ=255)                                                                                              aTGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATggg                                  <  2:777495/140‑1 (MQ=255)                                                                                              aTGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATggg                                  <  2:883400/140‑1 (MQ=255)                                                                                                gggAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGTATGTTGTGTCAGGTACTGGCTGCAATGggcg                                >  2:167498/1‑140 (MQ=255)                                                                                                gggAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGggcg                                >  1:1108278/1‑140 (MQ=255)                                                                                                   aGGTGAAAAAGTGGAAGTAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTATCCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGgcggcg                             <  2:1141414/140‑1 (MQ=255)                                                                                                     gTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATggg                                  >  2:991390/1‑133 (MQ=255)                                                                                                     gTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATggg                                  <  1:991390/133‑1 (MQ=255)                                                                                                     gTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGaa                           >  1:1019465/1‑140 (MQ=255)                                                                                                       gAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATa                         >  1:15794/1‑140 (MQ=255)                                                                                                        aaaaaGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATAc                        >  1:802732/1‑140 (MQ=255)                                                                                                        aaaaaGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATAc                        <  1:796566/140‑1 (MQ=255)                                                                                                        aaaaaGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATAc                        >  2:496568/1‑140 (MQ=255)                                                                                                        aaaaaGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATAc                        <  2:822257/140‑1 (MQ=255)                                                                                                        aaaaaGTGGAAGAAGTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATAc                        >  1:436257/1‑140 (MQ=255)                                                                                                                   gaagTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGTATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGcaacaa             <  1:167498/140‑1 (MQ=255)                                                                                                                     agTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACg           <  1:792926/140‑1 (MQ=255)                                                                                                                      gTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACGc          <  1:757937/140‑1 (MQ=255)                                                                                                                      gTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACGc          <  1:549512/140‑1 (MQ=255)                                                                                                                      gTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACGc          <  1:880775/140‑1 (MQ=255)                                                                                                                      gTGGCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACGc          <  2:113681/140‑1 (MQ=255)                                                                                                                        ggCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACg           >  1:249000/1‑137 (MQ=255)                                                                                                                        ggCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACg           <  2:249000/137‑1 (MQ=255)                                                                                                                        ggCAGCAGAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACGCAg        >  1:275818/1‑140 (MQ=255)                                                                                                                           agcagAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACGCAGGGt     <  2:802732/140‑1 (MQ=255)                                                                                                                           agcagAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACGCAGGGt     >  1:718418/1‑140 (MQ=255)                                                                                                                             cagAGCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACGCAGGGTTa   <  2:683366/140‑1 (MQ=255)                                                                                                                              agagCAAGCACCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACGCAGGGTTAc  <  2:1107674/140‑1 (MQ=255)                                                                                                                                       |                                                                                                                                   GAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGAATACCTGGGCAACAACGCAGGGTTAC  >  NC_000913/2564844‑2565108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑