New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4628780	NA (NA)	3 (0.060)	3/240	5.2	NA	noncoding (37/37 nt)	other	REP354b
	?	NC_000913	= 4633089	NA (NA)					intergenic (+3/+144)	trpR/yjjX	DNA‑binding transcriptional repressor TrpR/ITPase/XTPase
Rejected: Coverage evenness skew score above cutoff.

GCGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGG  >  NC_000913/4632950‑4633214                                                                                                                                            |                                                                                                                                     gcgAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGAttt                                                                                                                                      >  1:791253/1‑140 (MQ=255)  cgAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGAtttt                                                                                                                                     <  2:703245/140‑1 (MQ=255)     aaTGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTa                                                                                                                                  <  2:797715/140‑1 (MQ=255)       tGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGGCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAgg                                                                                                                                <  2:638321/140‑1 (MQ=255)        gAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGc                                                                                                                               <  2:447089/140‑1 (MQ=255)        gAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGc                                                                                                                               <  1:337491/140‑1 (MQ=255)        gAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGc                                                                                                                               <  2:77923/140‑1 (MQ=255)        gAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGc                                                                                                                               <  1:860716/140‑1 (MQ=255)            cAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGa                                                                                                                           >  1:389060/1‑140 (MQ=255)                     ttAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTg                                                                                                                  >  1:372504/1‑140 (MQ=255)                     ttAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTg                                                                                                                  <  2:484016/140‑1 (MQ=255)                             tGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCa                                                                                                   >  1:636049/1‑140 (MQ=255)                              gAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAg                                                                                                  <  1:559197/140‑1 (MQ=255)                                 cTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCa                                                                                               <  1:896191/140‑1 (MQ=255)                                      cgcAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTg                                                                                          >  2:776533/1‑140 (MQ=255)                                                gcgACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGc                                                                                <  1:168690/140‑1 (MQ=255)                                                     gaTTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGAt                                                                           <  2:619849/140‑1 (MQ=255)                                                     gaTTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAAGGGTTGCTGAAAAGCGATTGTTTTTGTAAGACTGATAATACGGGG‑‑‑‑‑‑‑GGCATCAGGCGTCGGGCACCGAATGCCCGAt                                                                           >  2:235699/1‑140 (MQ=255)                                                             gTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTg                                                                   <  2:47929/140‑1 (MQ=255)                                                             gTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTg                                                                   <  1:235699/140‑1 (MQ=255)                                                             gTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTg                                                                   <  2:430030/140‑1 (MQ=255)                                                              tGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGa                                                                  <  2:372504/140‑1 (MQ=255)                                                               ggATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGaa                                                                 <  2:785621/140‑1 (MQ=255)                                                               ggATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGaa                                                                 <  2:650821/140‑1 (MQ=255)                                                                    tAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTg                                                                   <  2:791253/140‑1 (MQ=18)                                                                     aaCAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGa                                                                  >  1:756965/1‑133 (MQ=255)                                                                     aaCAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGa                                                                  <  2:756965/133‑1 (MQ=255)                                                                       cAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTAt                                                         <  2:473758/140‑1 (MQ=255)                                                                       cAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTAt                                                         <  2:644538/140‑1 (MQ=255)                                                                       cAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTAt                                                         <  1:872006/140‑1 (MQ=255)                                                                       cAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGaa                                                                 <  2:381648/139‑1 (MQ=17)                                                                       cAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGaa                                                                 >  1:381648/1‑139 (MQ=17)                                                                         gCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATcc                                                       >  2:178654/1‑140 (MQ=255)                                                                         gCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATcc                                                       >  1:460357/1‑140 (MQ=255)                                                                           cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGt                                                     >  1:379323/1‑140 (MQ=255)                                                                           cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGt                                                     >  1:226250/1‑140 (MQ=255)                                                                           cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGAGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGt                                                     >  2:615466/1‑140 (MQ=255)                                                                            tGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTc                                                    >  2:665730/1‑140 (MQ=255)                                                                              aaaGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCt                                                  <  2:236062/140‑1 (MQ=255)                                                                              aaaGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCt                                                  >  1:815588/1‑140 (MQ=255)                                                                                 gCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa                                               <  2:389060/140‑1 (MQ=255)                                                                                        ccGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATAccc                                        <  2:815588/140‑1 (MQ=255)                                                                                          gTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGt                                      <  2:44730/140‑1 (MQ=255)                                                                                          gTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGt                                      >  2:252411/1‑140 (MQ=255)                                                                                             gAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAAt                                   <  1:563661/140‑1 (MQ=255)                                                                                                           gCTGGAAGAGGAGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTgg                     <  1:615466/140‑1 (MQ=255)                                                                                                             tGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTa                   >  2:742565/1‑140 (MQ=255)                                                                                                                    ggTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGa            <  2:226250/140‑1 (MQ=255)                                                                                                                     gtgtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGt                    >  2:638729/1‑131 (MQ=255)                                                                                                                     gtgtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGt                    <  1:638729/131‑1 (MQ=255)                                                                                                                     gtgtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGAt           >  2:463099/1‑140 (MQ=255)                                                                                                                      tgtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATa          >  1:378746/1‑140 (MQ=255)                                                                                                                              aaaaGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCgg  <  2:379323/140‑1 (MQ=255)                                                                                                                              aaaaGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCgg  <  2:256578/140‑1 (MQ=255)                                                                                                                              aaaaGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCgg  >  1:473748/1‑140 (MQ=255)                                                                                                                              aaaaGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCgg  >  1:256578/1‑140 (MQ=255)                                                                                                                                            |                                                                                                                                     GCGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGG  >  NC_000913/4632950‑4633214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.