Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,558,126 A→G V55A (GTT→GCT)  hypT ← DNA‑binding transcriptional dual regulator HypT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,558,1260AG100.0% 177.9 / NA 48V55A (GTT→GCT) hypTDNA‑binding transcriptional dual regulator HypT
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (23/25);  total (23/25)

TAATCGCTGCCGCCACGCAGCTCTGCCAGATTGCTCTCTAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAACACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCATAAAGCCATTTGGTTTCAATAT  >  NC_000913/4557997‑4558261
                                                                                                                                 |                                                                                                                                       
tAATCGCTGCCGCCACGCAGCTCTGCCAGATTGCTCTCTAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGc                                                                                                                               <  1:181963/140‑1 (MQ=255)
      cTGCCGCCACGCAGCTCTGCCAGATTGCTCTCTAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTc                                                                                                                         <  1:895123/140‑1 (MQ=255)
        gccgccACGCAGCTCTGCCAGATTGCTCTCTAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCa                                                                                                                       >  2:906055/1‑140 (MQ=255)
         ccgccACGCAGCTCTGCCAGATTGCTCTCTAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAg                                                                                                                      <  2:460330/140‑1 (MQ=255)
             cACGCAGCTCTGCCAGATTGCTCTCTAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCa                                                                                                                  >  2:536477/1‑140 (MQ=255)
                      ctGCCAGATTGCTCTCTAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATgcgg                                                                                                         <  2:738769/140‑1 (MQ=255)
                      ctGCCAGATTGCTCTCTAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATgcgg                                                                                                         <  2:286435/140‑1 (MQ=255)
                       tGCCAGATTGCTCTCTAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATgcggc                                                                                                        >  1:253153/1‑140 (MQ=255)
                       tGCCAGATTGCTCTCTAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATgcggc                                                                                                        <  1:690655/140‑1 (MQ=255)
                                 ctctctAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGc                                                                                              <  1:78198/140‑1 (MQ=255)
                                 ctctctAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGc                                                                                              <  2:343907/140‑1 (MQ=255)
                                  tctctAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGcc                                                                                             <  1:573501/140‑1 (MQ=255)
                                      tAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGtt                                                                                         >  1:415615/1‑140 (MQ=255)
                                          tGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCga                                                                                     <  2:253153/140‑1 (MQ=255)
                                          tGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCga                                                                                     <  2:254962/140‑1 (MQ=255)
                                          tGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCga                                                                                     <  1:536477/140‑1 (MQ=255)
                                          tGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCga                                                                                     <  2:483201/140‑1 (MQ=255)
                                              gCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACg                                                                                 >  1:488662/1‑140 (MQ=255)
                                              gCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACg                                                                                 >  2:394456/1‑140 (MQ=255)
                                              gCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACg                                                                                 <  2:281335/140‑1 (MQ=255)
                                                 aCAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTg                                                                              <  1:115747/140‑1 (MQ=255)
                                                     aTGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCgac                                                                          >  2:683226/1‑140 (MQ=255)
                                                      tGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCgact                                                                         >  1:381006/1‑140 (MQ=255)
                                                              cTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTgccg                                                                 >  1:340410/1‑140 (MQ=255)
                                                               tGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTgccgc                                                                <  2:762291/140‑1 (MQ=255)
                                                                     tGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGa                                                          >  2:145025/1‑140 (MQ=255)
                                                                      ggAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGaa                                                         <  1:145025/140‑1 (MQ=255)
                                                                              ttCGCTTGTTCTGAGAGTTTCAGCGGCGTTACCTGGCGGCTAAACAATTCCGCACCAATCCCCTGCTCCAGCGCACAGGTGGGGGGGCTCAAGGTCGGTTGGGAGACCGGTCGACTACCTGCCGCCAGGGAAAAATTgtg                                                 >  2:920613/1‑138 (MQ=255)
                                                                                cccTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGc                                               >  2:505649/1‑140 (MQ=255)
                                                                                 ccTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCa                                              <  1:423924/140‑1 (MQ=255)
                                                                                  cTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCAt                                             >  1:640426/1‑140 (MQ=255)
                                                                                        cTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTcc                                       <  2:705233/140‑1 (MQ=255)
                                                                                                tGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAg                               >  1:131395/1‑140 (MQ=255)
                                                                                                tGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAg                               >  1:278660/1‑140 (MQ=255)
                                                                                                tGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAg                               >  2:715926/1‑140 (MQ=255)
                                                                                                tGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAg                               >  1:551237/1‑140 (MQ=255)
                                                                                                tGCAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAg                               >  1:634425/1‑140 (MQ=255)
                                                                                                  cAGCGGCGTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGaa                             <  2:340410/140‑1 (MQ=255)
                                                                                                     cggcgTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAAt                          >  2:18148/1‑140 (MQ=255)
                                                                                                       gcgTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCCGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCa                        >  2:179596/1‑140 (MQ=255)
                                                                                                         gTTACCTGGCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCATa                      <  1:394456/140‑1 (MQ=255)
                                                                                                                ggCGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCATAAAGCCAt               <  2:867506/140‑1 (MQ=255)
                                                                                                                  cGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCATAAAGCCAttt             >  1:312387/1‑140 (MQ=255)
                                                                                                                  cGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCATAAAGCCAttt             >  2:296880/1‑140 (MQ=255)
                                                                                                                  cGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCATAAAGCCAttt             <  1:248304/140‑1 (MQ=255)
                                                                                                                  cGGTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCATAAAGCCAttt             <  2:183309/140‑1 (MQ=255)
                                                                                                                    gTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCATAAAGCCATTTgg           >  1:383722/1‑140 (MQ=255)
                                                                                                                    gTTAAACAATTCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCATAAAGCCATTTgg           >  1:139584/1‑140 (MQ=255)
                                                                                                                             ttCAGCACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCATAAAGCCATTTGGTTTCAatat  <  2:640426/140‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                       
TAATCGCTGCCGCCACGCAGCTCTGCCAGATTGCTCTCTAACTGTTGCAACAGATGGCGGATCTGCGAATGGAAGATTTTCCCTTGTTCTGAGAGTTGCAGCGGCGTTACCTGGCGGTTAAACAATTCAACACCAATCGCCTGTTCCAGCGCACGGATGCGGCGGCTGAATGCCGGTTGCGAGACGTTGCGACTGACTGCCGCCTGGGAAAAATTGCGGCATTTTTCCAGGGTCAGAAAATCATAAAGCCATTTGGTTTCAATAT  >  NC_000913/4557997‑4558261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑