Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,466,397	T→C	intergenic (+14/‑148)	argW → / → intS	tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,466,397	0	T	C	100.0%	312.0 / NA	90	intergenic (+14/‑148)	argW/intS	tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (46/44);  total (46/44)

GCGTACTTACCCCGCACTCCATTAGCGGGTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGACGGGTAAAAAGTGGATAAAATAATTTTACCCAC  >  NC_000913/2466263‑2466531                                                                                                                                       |                                                                                                                                       gCGTACTTACCCCGCACTCCATTAGCGGGTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCAt                                                                                                                                   <  2:1399838/140‑1 (MQ=255)               cACTCCATTAGCGGGTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGc                                                                                                                     >  1:1264558/1‑140 (MQ=255)               cACTCCATTAGCGGGTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGc                                                                                                                     >  1:68387/1‑140 (MQ=255)                    cATTAGCGGGTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTAcc                                                                                                                            <  1:438206/128‑1 (MQ=255)                    cATTAGCGGGTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTAcc                                                                                                                            >  2:438206/1‑128 (MQ=255)                    cATTAGCGGGTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAAt                                                                                                                <  2:1264558/140‑1 (MQ=255)                    cATTAGCGGGTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAAt                                                                                                                <  1:1346057/140‑1 (MQ=255)                        aGCGGGTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATcccc                                                                                                            <  2:695166/140‑1 (MQ=255)                          cGGGTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTg                                                                                                          >  2:1087941/1‑140 (MQ=255)                            ggTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGaa                                                                                                        >  1:496579/1‑140 (MQ=255)                              tataCTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCt                                                                                                           >  2:408095/1‑135 (MQ=255)                              tataCTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCt                                                                                                           <  1:408095/135‑1 (MQ=255)                              tataCTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAata                                                                                                      >  2:533947/1‑140 (MQ=255)                              tataCTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAata                                                                                                      >  1:762966/1‑140 (MQ=255)                              tataCTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAata                                                                                                      >  1:620705/1‑140 (MQ=255)                                    cATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGc                                                                                                <  1:533947/140‑1 (MQ=255)                                     aTGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCa                                                                                               <  1:403569/140‑1 (MQ=255)                                       gCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCt                                                                                                           >  1:661747/1‑126 (MQ=255)                                       gCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCt                                                                                                           <  2:661747/126‑1 (MQ=255)                                       gCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAat                                                                                                       >  1:446177/1‑130 (MQ=255)                                       gCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAat                                                                                                       <  2:446177/130‑1 (MQ=255)                                       gCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCAtt                                                                                             >  2:1205332/1‑140 (MQ=255)                                       gCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCAtt                                                                                             >  1:893222/1‑140 (MQ=255)                                       gCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCAtt                                                                                             >  2:1228735/1‑140 (MQ=255)                                       gCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATACGTACCAGTCCGCAAAATCCCCTGAATATCAAGCAtt                                                                                             >  1:448276/1‑140 (MQ=255)                                       gCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAA‑GGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAat                                                                                                       <  1:1325225/129‑1 (MQ=255)                                       gCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAA‑GGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAat                                                                                                       >  2:1325225/1‑129 (MQ=255)                                          gCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGc                                                                                                <  1:276446/134‑1 (MQ=255)                                          gCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGc                                                                                                >  2:276446/1‑134 (MQ=255)                                          gCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCg                                                                                          >  1:762325/1‑140 (MQ=255)                                          gCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCg                                                                                          <  1:1087941/140‑1 (MQ=255)                                          gCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCg                                                                                          >  2:426325/1‑140 (MQ=255)                                          gCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCg                                                                                          <  1:138354/140‑1 (MQ=255)                                          gCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCg                                                                                          <  2:762966/140‑1 (MQ=255)                                          gCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATACGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCg                                                                                          <  2:448276/140‑1 (MQ=255)                                          gCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTGCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCg                                                                                          <  2:496579/140‑1 (MQ=255)                                             ttGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAg                                                                                       >  2:141074/1‑140 (MQ=255)                                             ttGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAg                                                                                       >  1:601001/1‑140 (MQ=255)                                             ttGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAg                                                                                       >  1:774060/1‑140 (MQ=255)                                                     ttAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAg                                                                               >  2:1609/1‑140 (MQ=255)                                                     ttAGTTAAATGGATACAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAg                                                                               >  2:1403297/1‑140 (MQ=255)                                                      tAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGt                                                                              <  2:601001/140‑1 (MQ=255)                                                      tAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGt                                                                              <  2:762325/140‑1 (MQ=255)                                                       aGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCg                                                                                          >  2:953514/1‑127 (MQ=255)                                                       aGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCg                                                                                          <  1:953514/127‑1 (MQ=255)                                                          tAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCg                                                                                          <  2:321461/124‑1 (MQ=255)                                                          tAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCg                                                                                          >  1:321461/1‑124 (MQ=255)                                                          tAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGt                                                                          >  2:1236735/1‑140 (MQ=255)                                                            aaTGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCa                                                                        >  1:683168/1‑140 (MQ=255)                                                                gATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGt                                                                    <  2:1149763/140‑1 (MQ=255)                                                                 atatAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGtt                                                                   <  1:1205332/140‑1 (MQ=255)                                                                 atatAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGtt                                                                   >  1:365037/1‑140 (MQ=255)                                                                   ataACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCg                                                                 >  2:873193/1‑140 (MQ=255)                                                                   ataACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCg                                                                 >  1:1361393/1‑140 (MQ=255)                                                                       cGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTc                                                             >  1:936978/1‑140 (MQ=255)                                                                       cGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTc                                                             <  2:893222/140‑1 (MQ=255)                                                                       cGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTc                                                             <  2:365037/140‑1 (MQ=255)                                                                          gCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGa                                                          >  2:1084208/1‑140 (MQ=255)                                                                          gCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGa                                                          <  2:722981/140‑1 (MQ=255)                                                                               tcctAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAATCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGtt                                                     >  2:413804/1‑140 (MQ=255)                                                                               tcctAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGtt                                                     >  1:803775/1‑140 (MQ=255)                                                                               tcctAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGtt                                                     >  1:747725/1‑140 (MQ=255)                                                                                cctAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTg                                                    >  2:1422671/1‑140 (MQ=255)                                                                                  tAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGAc                                                  <  1:1007626/140‑1 (MQ=255)                                                                                  tAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGAc                                                  <  2:747725/140‑1 (MQ=255)                                                                                    aGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAg                                                >  1:210616/1‑140 (MQ=255)                                                                                      ggCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGcc                                              <  2:774060/140‑1 (MQ=255)                                                                                      ggCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGcc                                              <  1:1422671/140‑1 (MQ=255)                                                                                       gCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAATCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCg                                             <  1:413804/140‑1 (MQ=255)                                                                                       gCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCg                                             <  1:426325/140‑1 (MQ=255)                                                                                       gCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCg                                             <  2:936978/140‑1 (MQ=255)                                                                                       gCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCg                                             <  1:141074/140‑1 (MQ=255)                                                                                       gCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCg                                             <  2:1361393/140‑1 (MQ=255)                                                                                       gCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCg                                             <  1:1236735/140‑1 (MQ=255)                                                                                       gCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCg                                             <  1:1228735/140‑1 (MQ=255)                                                                                           aTTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCg                                             <  2:1365485/136‑1 (MQ=255)                                                                                           aTTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCg                                             >  1:1365485/1‑136 (MQ=255)                                                                                           aTTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACt                                         >  1:512711/1‑140 (MQ=255)                                                                                                aGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCg                                             >  2:1264898/1‑131 (MQ=255)                                                                                                aGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCg                                             <  1:1264898/131‑1 (MQ=255)                                                                                                      gATTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGACGGGt                              <  2:210616/140‑1 (MQ=255)                                                                                                       aTTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGa                                   <  1:1112817/134‑1 (MQ=255)                                                                                                       aTTCCTGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGa                                   >  2:1112817/1‑134 (MQ=255)                                                                                                            tGCAGGGGACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGACGGGTAAAAAg                        >  1:199004/1‑140 (MQ=255)                                                                                                                ggggACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGACGGGTAAAAAGTgg                     >  1:1235178/1‑139 (MQ=255)                                                                                                                ggggACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGACGGGTAAAAAGTgg                     <  2:1235178/139‑1 (MQ=255)                                                                                                                ggggACACCATTTATCAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGACGGGTAAAAAGTGGa                    <  2:683168/140‑1 (MQ=255)                                                                                                                               cAGTTCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGACGGGTAAAAAGTGGATAAAATAATTTTAcc     <  1:145199/140‑1 (MQ=255)                                                                                                                                  ttCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGACGGGTAAAAAGTGGATAAAATAATTTTACCCAc  >  2:270036/1‑140 (MQ=255)                                                                                                                                  ttCGCCCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGACGGGTAAAAAGTGGATAAAATAATTTTACCCAc  >  1:491354/1‑140 (MQ=255)                                                                                                                                       |                                                                                                                                       GCGTACTTACCCCGCACTCCATTAGCGGGTATACTCATGCCGCATTGTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCATTTATCAGTTCGCTCCCATCCGTACCAGTCCGCAAAATCCCCTGAATATCAAGCATTCCGTAGATTTACAGTTCGTCATGGTTCGCTTCAGATCGTTGACAGCCGCACTCCATGACGGGTAAAAAGTGGATAAAATAATTTTACCCAC  >  NC_000913/2466263‑2466531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑