Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,593,065	T→C	pseudogene (5022/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,593,065	0	T	C	100.0%	257.3 / NA	75	pseudogene (5022/5422 nt)	yneO	AIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/42);  total (33/42)

GCTGTTCAGGTAGGTTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCAA  >  NC_000913/1592929‑1593200                                                                                                                                         |                                                                                                                                        gCTGTTCAGGTAGGTTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCAcc                                                                                                                                      <  1:1364219/140‑1 (MQ=255)    gTTCAGGTAGGTTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAgg                                                                                                                                   <  2:257179/140‑1 (MQ=255)     ttCAGGTAGGTTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGt                                                                                                                                  >  1:448699/1‑140 (MQ=255)     ttCAGGTAGGTTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGt                                                                                                                                  >  1:1062429/1‑140 (MQ=255)     ttCAGGTAGGTTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGt                                                                                                                                  >  2:770593/1‑140 (MQ=255)     ttCAGGTAGGTTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGt                                                                                                                                  >  1:747921/1‑140 (MQ=255)     ttCAGGTAGGTTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGt                                                                                                                                  >  2:1206342/1‑140 (MQ=255)     ttCAGGTAGGTTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGt                                                                                                                                  >  2:253186/1‑140 (MQ=255)     ttCAGGTAGGTTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGt                                                                                                                                  >  2:1311559/1‑140 (MQ=255)           taggtTTTCTCCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAg                                                                                                                            <  1:1408436/140‑1 (MQ=255)           taggtTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAg                                                                                                                            <  2:1334872/140‑1 (MQ=255)           taggtTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAg                                                                                                                            <  1:556958/140‑1 (MQ=255)            aggtTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGc                                                                                                                           <  2:369758/140‑1 (MQ=255)            aggtTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGc                                                                                                                           <  2:1062429/140‑1 (MQ=255)             ggtTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGt                                                                                                                                  <  2:730040/132‑1 (MQ=255)             ggtTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGt                                                                                                                                  >  1:730040/1‑132 (MQ=255)               ttttCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTc                                                                                                                        >  2:936122/1‑140 (MQ=255)                    aCCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTc                                                                                                                   >  1:1061887/1‑140 (MQ=255)                       ccAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCt                                                                                                                <  1:936122/140‑1 (MQ=255)                        cAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTg                                                                                                               >  1:97849/1‑140 (MQ=255)                               cgTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTaa                                                                                                        >  2:1137011/1‑140 (MQ=255)                               cgTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTaa                                                                                                        >  2:246487/1‑140 (MQ=255)                                  ttGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTGAGCGTCCCTTCGCt                                                                                                                <  2:1289515/129‑1 (MQ=255)                                  ttGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTGAGCGTCCCTTCGCt                                                                                                                >  1:1289515/1‑129 (MQ=255)                                      ccaTTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTcc                                                                                                 <  1:231527/139‑1 (MQ=255)                                      acaTTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTcc                                                                                                 <  1:1378616/140‑1 (MQ=255)                                           tCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCtt                                                                                            <  1:1375697/140‑1 (MQ=255)                                           tCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCtt                                                                                            <  1:1429427/140‑1 (MQ=255)                                           tCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCtt                                                                                            <  1:545802/140‑1 (MQ=255)                                           tCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCtt                                                                                            <  1:179904/140‑1 (MQ=255)                                           tCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCtt                                                                                            <  2:608198/140‑1 (MQ=255)                                             cGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCa                                                                                          <  1:246487/140‑1 (MQ=255)                                             cGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCa                                                                                          <  2:414553/140‑1 (MQ=255)                                             cGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCa                                                                                          <  1:1137011/140‑1 (MQ=255)                                              gTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCaa                                                                                         <  1:564891/140‑1 (MQ=255)                                                    ttCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGtat                                                                                   >  2:917606/1‑140 (MQ=255)                                                    ttCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGtat                                                                                   >  1:348179/1‑140 (MQ=255)                                                      ccGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATac                                                                                 <  2:448699/140‑1 (MQ=255)                                                      ccGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATac                                                                                 <  1:1206342/140‑1 (MQ=255)                                                      ccGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATac                                                                                 <  2:1392036/140‑1 (MQ=255)                                                      ccGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACCCTCCAGGTATTCAGCGTCCCTGGGCGGCGGCTAAATTTTCCCGGTTCAAAGGTATac                                                                                 <  2:43333/140‑1 (MQ=255)                                                        gTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATaccc                                                                               <  1:1311559/140‑1 (MQ=255)                                                           tCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATacccacc                                                                            <  2:520190/140‑1 (MQ=255)                                                           tCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATacccacc                                                                            <  2:1061887/140‑1 (MQ=255)                                                               tGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCa                                                                        >  1:712590/1‑140 (MQ=255)                                                                    gTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACaga                                                                   <  1:770593/140‑1 (MQ=255)                                                                             ttCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTcac                                                          >  2:307893/1‑140 (MQ=255)                                                                                  ggTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATTCCCACCCTCAACAGAGGCCGTCACACcgc                                                     <  2:97849/140‑1 (MQ=255)                                                                                  ggTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACcgc                                                     >  1:1310350/1‑140 (MQ=255)                                                                                   gTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACcgcg                                                    <  2:926020/140‑1 (MQ=255)                                                                                     aTGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCgag                                                  <  2:967369/140‑1 (MQ=255)                                                                                          cGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAACGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCa                                             <  2:1310350/140‑1 (MQ=255)                                                                                            gAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATa                                           <  2:721610/140‑1 (MQ=255)                                                                                             aaTCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAg                                          >  2:1126595/1‑140 (MQ=255)                                                                                                 tttCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAgtcgt                                      >  2:1466209/1‑140 (MQ=255)                                                                                                         ccATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGaa                              <  2:435067/140‑1 (MQ=255)                                                                                                          cATCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAAc                             >  1:905563/1‑140 (MQ=255)                                                                                                           aTCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACg                            >  1:1294129/1‑140 (MQ=255)                                                                                                           aTCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACg                            >  2:856955/1‑140 (MQ=255)                                                                                                           aTCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACg                            <  2:1177242/140‑1 (MQ=255)                                                                                                            tCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACgg                           >  2:176898/1‑140 (MQ=255)                                                                                                            tCCAGGTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACgg                           >  1:698643/1‑140 (MQ=255)                                                                                                                 gTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATc                      <  1:1466209/140‑1 (MQ=255)                                                                                                                 gTGATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATc                      >  1:971382/1‑140 (MQ=255)                                                                                                                   gATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAGCGGTTATCgg                    >  1:1009913/1‑140 (MQ=255)                                                                                                                   gATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCgg                    >  1:313297/1‑140 (MQ=255)                                                                                                                   gATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCgg                    <  1:307893/140‑1 (MQ=255)                                                                                                                   gATTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCgg                    <  1:176898/140‑1 (MQ=255)                                                                                                                    aTTTGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGa                   >  2:437198/1‑140 (MQ=255)                                                                                                                      ttGCGCCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAAc                 <  2:971382/140‑1 (MQ=255)                                                                                                                        gcgcCTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTg               <  2:698643/140‑1 (MQ=255)                                                                                                                           ccTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACg            >  1:578635/1‑140 (MQ=255)                                                                                                                           ccTGTGGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACg            >  1:1445554/1‑140 (MQ=255)                                                                                                                              gtgGCTGGACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTg         >  2:233540/1‑140 (MQ=255)                                                                                                                                     gACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCaa  <  1:233540/140‑1 (MQ=255)                                                                                                                                     gACGCACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCaa  <  1:917606/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                        GCTGTTCAGGTAGGTTTTCACCCCAAGTCGCGTTTGCACATTTCCGTCGCCTTCCGTTTCAATGCGCGTTCCGTCTTTCCGGGTATGGTCGGAATCTTTCACACCCATCCAGGTGATTTGCGCCTGTGGCTGGACGTACCAGGTATTCAGCGTCCCTTCGCTGCCGCTAAATGTTCCCGCTTCAAAGGTATACCCACCCTCAACAGAGGCCGTCACACCGCGAGAATCATAGTCGTCAGCAGAACGGTTATCGGAACTGACGCTGTTATCAA  >  NC_000913/1592929‑1593200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑