Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,223,852 G→A P556P (CCG→CCA dld → D‑lactate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,223,8520GA100.0% 216.5 / NA 62P556P (CCG→CCAdldD‑lactate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (28/34);  total (28/34)

AAGAACAGATGCTGGAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCGGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTAATCGTTCTGTGCCGTCTGCCCCGCCGCCGCCATTTGGGCGGCTTT  >  NC_000913/2223716‑2223985
                                                                                                                                        |                                                                                                                                     
aaGAACAGATGCTGGAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCaggg                                                                                                                                    >  2:1400770/1‑140 (MQ=255)
 aGAACAGATGCTGGAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGa                                                                                                                                   <  1:424091/140‑1 (MQ=255)
 aGAACAGATGCTGGAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGa                                                                                                                                   <  2:847888/140‑1 (MQ=255)
   aaCAGATGCTGGAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATc                                                                                                                                 >  1:440585/1‑140 (MQ=255)
      aGATGCTGGAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGt                                                                                                                              <  1:181747/140‑1 (MQ=255)
      aGATGCTGGAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGt                                                                                                                              >  1:295810/1‑140 (MQ=255)
      aGATGCTGGAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGt                                                                                                                              <  1:593/140‑1 (MQ=255)
       gATGCTGGAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTa                                                                                                                             >  2:293228/1‑140 (MQ=255)
        aTGCTGGAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTaa                                                                                                                            <  2:750743/140‑1 (MQ=255)
             ggAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCa                                                                                                                       >  1:1320122/1‑140 (MQ=255)
                              gcggcgcgCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTgg                                                                                                      >  1:973273/1‑140 (MQ=255)
                              gcggcgcgCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTgg                                                                                                      >  1:58240/1‑140 (MQ=255)
                              gcggcgcgCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTgg                                                                                                      >  2:49876/1‑140 (MQ=255)
                              gcggcgcgCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTgg                                                                                                      >  1:231363/1‑140 (MQ=255)
                               cggcgcgCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGc                                                                                                     <  1:45627/140‑1 (MQ=255)
                                ggcgcgCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGACAACGATCCGACCAACTGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCa                                                                                                    <  2:1312289/140‑1 (MQ=255)
                                  cgcgcAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAgg                                                                                                  >  1:1082645/1‑140 (MQ=255)
                                     gcAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAg                                                                                               <  1:1293241/140‑1 (MQ=255)
                                     gcAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAg                                                                                               <  2:1436072/140‑1 (MQ=255)
                                           cccTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGt                                                                                         <  2:231363/140‑1 (MQ=255)
                                              tGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTaaa                                                                                      >  2:871351/1‑140 (MQ=255)
                                                   aGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTa                                                                                 >  2:1325837/1‑140 (MQ=255)
                                                   aGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTa                                                                                 >  2:300297/1‑140 (MQ=255)
                                                   aGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTa                                                                                 >  2:1105113/1‑140 (MQ=255)
                                                     cATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAAtt                                                                                  >  2:1007126/1‑137 (MQ=255)
                                                     cATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAAtt                                                                                  <  1:1007126/137‑1 (MQ=255)
                                                     cATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACg                                                                               <  1:827745/140‑1 (MQ=255)
                                                       tAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGa                                                                             <  1:349689/140‑1 (MQ=255)
                                                          cGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATgg                                                                          <  1:226685/140‑1 (MQ=255)
                                                          cGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATgg                                                                          <  2:829487/140‑1 (MQ=255)
                                                          cGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATgg                                                                          >  2:114076/1‑140 (MQ=255)
                                                            tCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCa                                                                        <  1:293228/140‑1 (MQ=255)
                                                               gTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCagag                                                                     >  2:983096/1‑140 (MQ=255)
                                                               gTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCagag                                                                     >  1:206058/1‑140 (MQ=255)
                                                                     tGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGCGGAGTAAAAATTACGGATGGCAGAGTATCGc                                                               <  2:1082645/140‑1 (MQ=255)
                                                                              cACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCa                                                             <  2:640131/133‑1 (MQ=255)
                                                                              cACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCa                                                             >  1:640131/1‑133 (MQ=255)
                                                                              cACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGaa                                                       <  1:1376242/139‑1 (MQ=255)
                                                                              cACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGaa                                                       >  2:1376242/1‑139 (MQ=255)
                                                                              cACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAAt                                                      >  2:878160/1‑140 (MQ=255)
                                                                              cACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAAt                                                      >  1:1245236/1‑140 (MQ=255)
                                                                                 cGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGaa                                                       <  1:1005377/136‑1 (MQ=255)
                                                                                 cGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGaa                                                       >  2:1005377/1‑136 (MQ=255)
                                                                                 cGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCa                                                   >  1:1236901/1‑140 (MQ=255)
                                                                                 cGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCa                                                   <  2:1245236/140‑1 (MQ=255)
                                                                                 cGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCa                                                   <  2:440585/140‑1 (MQ=255)
                                                                                   gagaCGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACt                                                 <  2:1236901/140‑1 (MQ=255)
                                                                                      aCGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCa                                                   >  1:1140389/1‑135 (MQ=255)
                                                                                      aCGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCa                                                   <  2:1140389/135‑1 (MQ=255)
                                                                                      aCGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTaa                                              <  1:508933/140‑1 (MQ=255)
                                                                                      aCGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTaa                                              <  2:665832/140‑1 (MQ=255)
                                                                                      aCGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTaa                                              >  2:578564/1‑140 (MQ=255)
                                                                                        gTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTAATc                                            <  1:1400770/140‑1 (MQ=255)
                                                                                          tGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCa                                                   <  2:360155/131‑1 (MQ=255)
                                                                                          tGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCa                                                   >  1:360155/1‑131 (MQ=255)
                                                                                           gCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTAATCGtt                                         <  1:983096/140‑1 (MQ=255)
                                                                                                aGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTAATCGTTCtgtg                                    <  2:973273/140‑1 (MQ=255)
                                                                                                           gagaACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTAATCGtt                                         <  1:1091080/124‑1 (MQ=255)
                                                                                                           gagaACGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTAATCGtt                                         >  2:1091080/1‑124 (MQ=255)
                                                                                                              aaCGATCCGACCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTAATCGTTCTGTGCCGTCTGCCccgcc                      <  1:578564/140‑1 (MQ=255)
                                                                                                                       aCCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTAATCGTTCTGTGCCGTCTGCCCCGCCGCCGCCa               <  2:413928/138‑1 (MQ=255)
                                                                                                                       aCCAACAGCATGAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTAATCGTTCTGTGCCGTCTGCCCCGCCGCCGCCa               >  1:413928/1‑138 (MQ=255)
                                                                                                                                  gAATCCAGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTAATCGTTCTGTGCCGTCTGCCCCGCCGCCGCCATTTGGGCGGCttt  <  2:295810/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                     
AAGAACAGATGCTGGAACTGCTACAGCAGCGCGGCGCGCAGTACCCTGCCGAGCATAACGTCGGTCATTTGTATAAAGCACCGGAGACGTTGCAGAAGTTCTATCGCGAGAACGATCCGACCAACAGCATGAATCCGGGGATCGGTAAAACCAGTAAACGGAAAAACTGGCAGGAAGTGGAGTAAAAATTACGGATGGCAGAGTATCGCCATCCGAATTCACTTAATCGTTCTGTGCCGTCTGCCCCGCCGCCGCCATTTGGGCGGCTTT  >  NC_000913/2223716‑2223985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: