BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,320,126	G→A	T28T (ACG→ACA)	atoS →	sensory histidine kinase AtoS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,320,126	0	G	A	100.0%	376.6 / NA	106	T28T (ACG→ACA)	atoS	sensory histidine kinase AtoS
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (49/57); total (49/57)

Only 100 of 106 total aligned reads displayed.

TCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTAC  >  NC_000913/2319989‑2320259

tcaCCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACt                                                                                                                                     <  1:1291451/140‑1 (MQ=255)

tcaCCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACt                                                                                                                                     <  2:133537/140‑1 (MQ=255)

tcaCCTTAACCTCTGACAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACt                                                                                                                                     <  2:1182385/140‑1 (MQ=255)

  aCCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTa                                                                                                                                   <  1:1383599/140‑1 (MQ=255)

    cTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACt                                                                                                                                 <  2:700195/140‑1 (MQ=255)

     ttAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTa                                                                                                                                <  1:127838/140‑1 (MQ=255)

      tAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTAt                                                                                                                               <  2:1409483/140‑1 (MQ=255)

       aaCCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTAtt                                                                                                                              >  1:1087770/1‑140 (MQ=255)

       aaCCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTAtt                                                                                                                              >  1:1230279/1‑140 (MQ=255)

             tGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTtat                                                                                                                        >  2:752856/1‑140 (MQ=255)

              gATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACt                                                                                                                                 <  1:501191/130‑1 (MQ=255)

              gATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACt                                                                                                                                 >  2:501191/1‑130 (MQ=255)

              gATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTta                                                                                                                         >  2:1323566/1‑138 (MQ=255)

              gATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTta                                                                                                                         <  1:1323566/138‑1 (MQ=255)

                  aTCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGt                                                                                                                   <  1:190277/140‑1 (MQ=255)

                   tCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTa                                                                                                                  >  2:252204/1‑140 (MQ=255)

                     gTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGa                                                                                                                <  1:1372556/140‑1 (MQ=255)

                       cATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGaaa                                                                                                              >  2:1374001/1‑140 (MQ=255)

                              cGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAgg                                                                                                       <  2:1087770/140‑1 (MQ=255)

                              cGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAgg                                                                                                       >  2:132726/1‑140 (MQ=255)

                               gcaCAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGa                                                                                                      >  2:70540/3‑140 (MQ=255)

                                gACAAGACTAGTGTATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGaaa                                                                                                              >  2:1230640/1‑131 (MQ=255)

                                gACAAGACTAGTGTATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGaaa                                                                                                              <  1:1230640/131‑1 (MQ=255)

                                gACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGaa                                                                                                         <  2:1273748/136‑1 (MQ=255)

                                gACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGaa                                                                                                         >  1:1273748/1‑136 (MQ=255)

                                 aCAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACg                                                                                                    <  1:600124/140‑1 (MQ=255)

                                 aCAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACg                                                                                                    <  1:1144008/140‑1 (MQ=255)

                                 aCAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACg                                                                                                    <  2:1298241/140‑1 (MQ=255)

                                 aCAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACg                                                                                                    <  1:70540/140‑1 (MQ=255)

                                     gACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGaa                                                                                                         >  1:1268416/1‑131 (MQ=255)

                                     gACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGaa                                                                                                         <  2:1268416/131‑1 (MQ=255)

                                     gACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTca                                                                                                >  1:770054/1‑140 (MQ=255)

                                     gACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTca                                                                                                <  1:132726/140‑1 (MQ=255)

                                     gACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATAGGTTATATCGTAGAAACGGAAGGACg                                                                                                    <  2:487677/136‑1 (MQ=255)

                                     gACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATAGGTTATATCGTAGAAACGGAAGGACg                                                                                                    >  1:487677/1‑136 (MQ=255)

                                          gTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGt                                                                                           <  2:14475/140‑1 (MQ=255)

                                          gTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGt                                                                                           >  1:52140/1‑140 (MQ=255)

                                           tGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTc                                                                                          <  1:127946/140‑1 (MQ=255)

                                             gATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCtt                                                                                        >  1:983294/1‑140 (MQ=255)

                                                ttCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATc                                                                                     >  1:1327806/1‑140 (MQ=255)

                                                  cAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTg                                                                                   >  1:1343773/1‑140 (MQ=255)

                                                                   aGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACtt                                                                  >  2:1272593/1‑140 (MQ=255)

                                                                   aGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACtt                                                                  >  1:253665/1‑140 (MQ=255)

                                                                   aGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACtt                                                                  >  2:333403/1‑140 (MQ=255)

                                                                   aGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACtt                                                                  >  2:855768/1‑140 (MQ=255)

                                                                   aGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACtt                                                                  >  1:908450/1‑140 (MQ=255)

                                                                    gTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACttt                                                                 >  2:207194/1‑140 (MQ=255)

                                                                    gTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACttt                                                                 >  2:965595/1‑140 (MQ=255)

                                                                    gTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACttt                                                                 >  1:1408726/1‑140 (MQ=255)

                                                                    gTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGAAGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACttt                                                                 >  1:1217141/1‑140 (MQ=255)

                                                                        aTTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTCTTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGc                                                             <  2:1337735/140‑1 (MQ=255)

                                                                        aTTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGc                                                             >  2:936524/1‑140 (MQ=255)

                                                                        aTTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGc                                                             >  1:883221/1‑140 (MQ=255)

                                                                        aTTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGc                                                             <  1:207194/140‑1 (MQ=255)

                                                                        aTTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGc                                                             <  2:1408726/140‑1 (MQ=255)

                                                                        aTTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGc                                                             <  2:798095/140‑1 (MQ=255)

                                                                             tCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTgg                                                        <  1:1272593/140‑1 (MQ=255)

                                                                                 cgccgcTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCaa                                                    <  1:1423030/140‑1 (MQ=255)

                                                                                  gccgcTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAAc                                                   >  1:1273307/1‑140 (MQ=255)

                                                                                   ccgcTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAAcc                                                  <  1:855768/140‑1 (MQ=255)

                                                                                      cTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCaa                                                    <  2:1430649/135‑1 (MQ=255)

                                                                                      cTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCaa                                                    >  1:1430649/1‑135 (MQ=255)

                                                                                      cTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGc                                               >  2:186032/1‑140 (MQ=255)

                                                                                      cTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGc                                               >  1:1171494/1‑140 (MQ=255)

                                                                                           gCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAGAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAAt                                          <  1:252204/140‑1 (MQ=255)

                                                                                           gCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAAt                                          <  2:1171494/140‑1 (MQ=255)

                                                                                            cAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATc                                         >  2:563158/1‑140 (MQ=255)

                                                                                            cAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATc                                         <  2:253665/140‑1 (MQ=255)

                                                                                              aTCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAg                                       <  2:488970/140‑1 (MQ=255)

                                                                                              aTCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAg                                       >  1:981467/1‑140 (MQ=255)

                                                                                               tCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAgg                                      <  2:1327806/140‑1 (MQ=255)

                                                                                               tCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAgg                                      <  1:333403/140‑1 (MQ=255)

                                                                                                    tGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAATCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTa                                 <  2:739532/140‑1 (MQ=255)

                                                                                                         cTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCt                                              <  2:662155/122‑1 (MQ=255)

                                                                                                         cTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCt                                              >  1:662155/1‑122 (MQ=255)

                                                                                                         cTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGa                            >  2:54635/1‑140 (MQ=255)

                                                                                                         cTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGa                            <  2:908450/140‑1 (MQ=255)

                                                                                                         cTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGa                            >  1:1020321/1‑140 (MQ=255)

                                                                                                         cTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGa                            <  2:1183089/140‑1 (MQ=255)

                                                                                                         cTGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGa                            >  1:293270/1‑140 (MQ=255)

                                                                                                         cTGATGGCAATCCTGATAGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGa                            >  1:974507/1‑140 (MQ=255)

                                                                                                          tGATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGAt                           <  2:883221/140‑1 (MQ=255)

                                                                                                           gATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATc                          <  2:293270/140‑1 (MQ=255)

                                                                                                           gATGGCAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATc                          <  2:1020321/140‑1 (MQ=255)

                                                                                                                cAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTAt                     <  2:482175/140‑1 (MQ=255)

                                                                                                                cAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTAt                     <  2:770054/140‑1 (MQ=255)

                                                                                                                cAATCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTAt                     <  1:54635/140‑1 (MQ=255)

                                                                                                                  aTCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGa                            >  2:395547/1‑131 (MQ=255)

                                                                                                                  aTCCTGATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGa                            <  1:395547/131‑1 (MQ=255)

                                                                                                                       gATGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATctct              >  1:442601/1‑140 (MQ=255)

                                                                                                                        aTGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTa             <  2:1230279/140‑1 (MQ=255)

                                                                                                                         tGGTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTAc            <  2:736900/140‑1 (MQ=255)

                                                                                                                          ggTCATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACa           <  1:186032/140‑1 (MQ=255)

                                                                                                                             cATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCg        >  1:1358316/1‑140 (MQ=255)

                                                                                                                             cATTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCg        >  1:881910/1‑140 (MQ=255)

                                                                                                                              aTTGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGa       >  2:340417/1‑140 (MQ=255)

                                                                                                                                tGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACa           >  2:173760/1‑134 (MQ=255)

                                                                                                                                tGTCCCAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACa           <  1:173760/134‑1 (MQ=255)

                                                                                                                                   cccAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTAc  <  1:655710/140‑1 (MQ=255)

                                                                                                                                   cccAACACTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTAc  <  2:888119/140‑1 (MQ=255)

TCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTAC  >  NC_000913/2319989‑2320259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`