mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,304,875 | 0 | C | T | 50.0% | 2.1 / 18.4 | 18 | intergenic (+482/+233) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 753,125 | 0 | T | A | 43.2% | 41.2 / 23.4 | 37 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 2,304,762 | 0 | T | C | 43.2% | 27.3 / 43.2 | 37 | intergenic (+369/+346) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 42.5% | 39.8 / 30.5 | 47 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 372,640 | 0 | T | G | 31.8% | 69.4 / 10.7 | 44 | L176V (TTA→GTA) | mhpD | 2‑hydroxypentadienoate hydratase |
| * | NC_000913 | 2,462,880 | 1 | . | C | 31.5% | 86.6 / 109.0 | 73 | intergenic (+234/‑132) | fadL/yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| * | NC_000913 | 2,001,918 | 0 | A | C | 31.4% | 49.6 / 11.3 | 35 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 1,315,936 | 0 | T | A | 23.6% | 131.3 / 13.0 | 55 | K34* (AAA→TAA) | yciG | protein YciG |
| * | NC_000913 | 29,496 | 0 | T | A | 21.9% | 103.0 / 10.8 | 41 | intergenic (+301/‑155) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha |
| * | NC_000913 | 531,761 | 0 | G | A | 21.8% | 111.1 / 23.2 | 55 | A154V (GCG→GTG) | allS | DNA‑binding transcriptional activator AllS |
| * | NC_000913 | 1,358,341 | 0 | A | G | 20.6% | 62.7 / 13.2 | 34 | Y283H (TAC→CAC) | puuP | putrescine:H(+) symporter PuuP |
| * | NC_000913 | 3,915,443 | 0 | G | . | 20.0% | 108.8 / 23.5 | 40 | intergenic (‑243/+110) | glmU/atpC | fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase/ATP synthase F1 complex subunit epsilon |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 75 (1.250) | 9 (0.170) | 8/242 | 3.6 | 13.4% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 50 (0.940) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1879834 | 6 (0.100) | 4 (0.070) | 4/268 | 5.4 | 40.0% | coding (115/360 nt) | yeaR | DUF1971 domain‑containing protein YeaR |
| ? | NC_000913 | 2514274 = | NA (NA) | noncoding (2/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 109203 | 57 (1.010) | 4 (0.070) +ACGTA |
3/248 | 5.6 | 6.3% | coding (925/2706 nt) | secA | protein translocation ATPase |
| ? | NC_000913 | 109204 = | 63 (1.050) | coding (926/2706 nt) | secA | protein translocation ATPase | |||||