Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 2,765,463 (TATGGCAC)6→9 intergenic (‑310/+50) abpA ← / ← yfjM CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2765412 =14 (0.160)88 (1.230) 52/220 0.2 94.0% intergenic (‑259/+101) abpA/yfjM CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM
?NC_000913 = 2765435 0 (0.000)intergenic (‑282/+78) abpA/yfjM CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM

Only 100 of 149 total aligned reads displayed.

CATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2765578‑2765412
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccatagtgccatagtgccatagtgcCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACA  <  NC_000913/2765435‑2765297
                                                                                                                                                                                                                                                                                                                  
CATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAG                                                                                                                                                                        >  2:989651/1‑140
CATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAG                                                                                                                                                                        >  1:687381/1‑140
CATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAG                                                                                                                                                                        <  1:1085835/140‑1
  TGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTG                                                                                                                                                                      >  2:115233/1‑140
  TGAACACGCGATGTTGAAATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTG                                                                                                                                                                      >  1:875231/1‑140
     ACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                                   <  2:486935/140‑1
      CACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCAT                                                                                                                                                                  <  2:551014/140‑1
         GCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGT                                                                                                                                                               >  2:1062604/1‑140
             TGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                           <  1:1133862/140‑1
             TGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                           <  1:1281022/140‑1
             TGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                           >  2:223464/1‑140
             TGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                           <  1:223464/140‑1
              GTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGAGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCAT                                                                                                                                                          >  2:833859/1‑140
                 GACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGg                                                                                                                                                       >  2:859050/1‑139
                 GACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                           <  1:1065213/136‑1
                 GACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                           >  2:1065213/1‑136
                   CATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC                                                                                                                                                     <  1:471240/140‑1
                     TTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                   <  2:688014/140‑1
                     TTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                   <  2:673472/140‑1
                     TTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                   <  1:655049/140‑1
                       GCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC                                                                                                                                                     >  2:758823/1‑136
                       GCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC                                                                                                                                                     <  1:758823/136‑1
                         TCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                           <  1:648424/128‑1
                         TCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                           >  2:648424/1‑128
                         TCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCAAAGTGCCATAGTGCCATAGTGCCATAGTGC                                                                                                                                                             <  2:573942/126‑1
                         TCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCAAAGTGCCATAGTGCCATAGTGCCATAGTGC                                                                                                                                                             >  1:573942/1‑126
                             AGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                           <  2:1165714/140‑1
                             AGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                           <  1:1274562/140‑1
                                  ATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                   <  1:1056975/127‑1
                                         TATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                   <  2:941244/136‑1
                                         TATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                   >  1:941244/1‑136
                                           TGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC                                                                                                                             >  2:1277906/1‑140
                                                  ACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTG                                                                                                                      >  1:995072/1‑140
                                                   CCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC                                                                                                                     >  1:121883/1‑140
                                                        CAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTG                                                                                                                <  2:501904/140‑1
                                                         AGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGAGCCATAGTGCCATAGTGCCATAGTGCGGTTGG                                                                                                               >  1:1112154/1‑140
                                                           GAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGAGCGGTTGGCG                                                                                                             >  2:857768/1‑140
                                                               TAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCT                                                                                                         <  2:1112154/140‑1
                                                                    CGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGC                                                                                                              >  2:927572/1‑130
                                                                    CGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGC                                                                                                              <  1:927572/130‑1
                                                                      TGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCT                                                                                                  >  1:702332/1‑140
                                                                      TGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGC                                                                                                              <  1:52687/128‑1
                                                                        CAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCT                                                                                                         <  1:326110/131‑1
                                                                                     TAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAAC                                                                                   >  1:769933/1‑140
                                                                                            AAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGTCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACC                                                                            <  1:1167299/140‑1
                                                                                            AAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACC                                                                            <  2:702332/140‑1
                                                                                             AGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCT                                                                           >  2:665581/1‑140
                                                                                             AGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCT                                                                           >  2:1093582/1‑140
                                                                                              GTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGGCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCCCACGTCTGAACTATTTGAAAACCAAAACCTT                                                                          >  2:1136129/1‑140
                                                                                                  GATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACC                                                                            <  1:1444843/134‑1
                                                                                                      ACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGG                                                                  <  2:919192/140‑1
                                                                                                      ACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGG                                                                  <  2:121883/140‑1
                                                                                                       CAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGC                                                                 <  1:1136129/140‑1
                                                                                                        AATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCT                                                                >  2:37588/1‑140
                                                                                                         ATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAAC                                                                             >  1:596664/1‑126
                                                                                                         ATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAAC                                                                             <  2:596664/126‑1
                                                                                                           CGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTG                                                             <  2:1384358/140‑1
                                                                                                           CGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGG                                                                  <  2:252666/135‑1
                                                                                                           CGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGG                                                                  >  1:252666/1‑135
                                                                                                             CTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCC                                                           <  1:979312/140‑1
                                                                                                             CTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCC                                                           <  1:665581/140‑1
                                                                                                             CTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGC                                                                 >  1:1153876/1‑134
                                                                                                             CTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGG                                                                  <  1:1519989/133‑1
                                                                                                             CTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGG                                                                  >  2:1519989/1‑133
                                                                                                                 CGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACC                                                       <  2:531097/140‑1
                                                                                                                  GGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCT                                                      >  1:1491317/1‑140
                                                                                                                          AGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAG                                              >  1:500180/1‑140
                                                                                                                             GCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTG                                           <  2:29223/140‑1
                                                                                                                              CCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGG                                          >  2:786789/1‑140
                                                                                                                              CCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGG                                          >  1:1123262/1‑140
                                                                                                                                ATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGG                                        >  2:145220/1‑140
                                                                                                                                ATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACG                                                  <  1:554670/130‑1
                                                                                                                                  AGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCA                                      <  1:833859/140‑1
                                                                                                                                  AGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCA                                      <  1:1062604/140‑1
                                                                                                                                  AGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCA                                      <  1:1085143/140‑1
                                                                                                                                  AGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCA                                      <  1:739584/140‑1
                                                                                                                                  AGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCA                                      <  1:1153324/140‑1
                                                                                                                                    TGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGT                                             <  1:168241/131‑1
                                                                                                                                    TGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGT                                             >  2:168241/1‑131
                                                                                                                                    TGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACG                                                  >  2:511088/1‑126
                                                                                                                                    TGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACG                                                  <  1:511088/126‑1
                                                                                                                                      CCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTAT                                  >  1:1449986/1‑140
                                                                                                                                              CCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATA                          >  2:955476/1‑140
                                                                                                                                                ATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAAC                        <  1:37588/140‑1
                                                                                                                                                 TAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACC                       >  1:876909/1‑140
                                                                                                                                                    TGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCA                                      >  2:459512/1‑122
                                                                                                                                                      CCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATT                  >  2:981963/1‑140
                                                                                                                                                         TAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGA               >  1:822649/1‑140
                                                                                                                                                              CCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCA          <  2:1449986/140‑1
                                                                                                                                                              CCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCA          >  2:445576/1‑140
                                                                                                                                                              CCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCA          >  1:620237/1‑140
                                                                                                                                                              CCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGT            <  2:200073/138‑1
                                                                                                                                                              CCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGT            <  1:992979/138‑1
                                                                                                                                                              CCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGT            >  1:200073/1‑138
                                                                                                                                                                ATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGG        <  1:435080/140‑1
                                                                                                                                                                  AGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGT      <  1:445576/140‑1
                                                                                                                                                                      CCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACA  >  2:833221/1‑140
                                                                                                                                                                      CCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACA  >  1:367914/1‑140
                                                                                                                                                                      CCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACA  >  2:575916/1‑140
                                                                                                                                                                      CCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACA  >  1:1352368/1‑140
                                                                                                                                                                                                                                                                                                                  
CATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2765578‑2765412
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccatagtgccatagtgccatagtgcCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACA  <  NC_000913/2765435‑2765297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.