BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,227,354	T→C	Y40C (TAC→TGC)	pliG ←	inhibitor of g‑type lysozyme

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,227,354	0	T	C	100.0%	434.7 / NA	123	Y40C (TAC→TGC)	pliG	inhibitor of g‑type lysozyme
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (62/61); total (62/61)

Only 100 of 123 total aligned reads displayed.

ATCAACTGAATCATCGATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGTACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATTGGTAGTCTC  >  NC_000913/1227218‑1227482

aTCAACTGAATCATCGATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACt                                                                                                                               >  1:443703/1‑140 (MQ=255)

aTCAACTGAATCATCGATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACt                                                                                                                               >  2:426070/1‑140 (MQ=255)

aTCAACTGAATCATCGATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACt                                                                                                                               >  1:1183462/1‑140 (MQ=255)

aTCAACTGAATCATCGATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACt                                                                                                                               <  1:898233/140‑1 (MQ=255)

   aaCTGAATCATCGATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAg                                                                                                                            <  2:1165896/140‑1 (MQ=255)

     cTGAATCATCGATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACt                                                                                                                               >  1:12267/1‑135 (MQ=255)

     cTGAATCATCGATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAtcg                                                                                                                          <  2:444627/140‑1 (MQ=255)

     cTGAATCATCGATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAgcg                                                                                                                          <  2:67708/140‑1 (MQ=255)

     cTGAATCATCGATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAgcg                                                                                                                          <  1:1204148/140‑1 (MQ=255)

               gATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGc                                                                                                                <  2:494239/140‑1 (MQ=255)

               gATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGc                                                                                                                <  2:821238/140‑1 (MQ=255)

               gATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGc                                                                                                                <  2:1367746/140‑1 (MQ=255)

                      ggCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGc                                                                                                                >  2:254557/1‑133 (MQ=255)

                      ggCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGc                                                                                                                <  1:254557/133‑1 (MQ=255)

                           gAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACt                                                                                                    <  2:629595/140‑1 (MQ=255)

                            aaGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTc                                                                                                   >  2:1527492/1‑140 (MQ=255)

                              gagGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCaa                                                                                                 <  2:87844/140‑1 (MQ=255)

                                    aGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGa                                                                                           <  1:1445334/140‑1 (MQ=255)

                                           gcgcCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCtt                                                                                    <  2:424458/140‑1 (MQ=255)

                                           gcgcCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCtt                                                                                    <  2:394755/140‑1 (MQ=255)

                                           gcgcCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCtt                                                                                    >  2:1187478/1‑140 (MQ=255)

                                              ccTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTAcc                                                                                 >  2:1105030/1‑140 (MQ=255)

                                                ttCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCg                                                                               >  1:764146/1‑140 (MQ=255)

                                                ttCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCg                                                                               >  1:1211917/1‑140 (MQ=255)

                                                ttCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCg                                                                               >  2:172114/1‑140 (MQ=255)

                                                   aTTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCgcag                                                                            <  2:1436522/140‑1 (MQ=255)

                                                      agagATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCaa                                                                         <  2:764146/140‑1 (MQ=255)

                                                         gaTACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGc                                                                      <  1:257514/140‑1 (MQ=255)

                                                          aTACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAg                                                                       <  2:1466595/138‑1 (MQ=255)

                                                          aTACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAg                                                                       >  1:1466595/1‑138 (MQ=255)

                                                            aCTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTAcc                                                                                 >  2:1159256/1‑126 (MQ=255)

                                                            aCTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTAcc                                                                                 >  2:764468/1‑126 (MQ=255)

                                                            aCTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTAcc                                                                                 <  1:764468/126‑1 (MQ=255)

                                                            aCTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCg                                                                   <  2:443703/140‑1 (MQ=255)

                                                            aCTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCg                                                                   >  1:979512/1‑140 (MQ=255)

                                                             cTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCg                                                                   >  2:753420/1‑139 (MQ=255)

                                                             cTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCg                                                                   <  1:753420/139‑1 (MQ=255)

                                                             cTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGt                                                                  >  1:709669/1‑140 (MQ=255)

                                                             cTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGt                                                                  >  1:892544/1‑140 (MQ=255)

                                                             cTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGt                                                                  >  1:488071/1‑140 (MQ=255)

                                                             cTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGt                                                                  >  2:464510/1‑140 (MQ=255)

                                                              tCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTg                                                                 <  2:709669/140‑1 (MQ=255)

                                                              tCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTg                                                                 <  1:284887/140‑1 (MQ=255)

                                                                   tGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGt                                                            <  2:488071/140‑1 (MQ=255)

                                                                   tGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGt                                                            >  2:1451185/1‑140 (MQ=255)

                                                                    gCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGtt                                                           >  1:1296231/1‑140 (MQ=255)

                                                                     cACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTa                                                          <  1:1377511/140‑1 (MQ=255)

                                                                      aCTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAg                                                         <  1:626462/140‑1 (MQ=255)

                                                                      aCTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAg                                                         <  2:452938/140‑1 (MQ=255)

                                                                       cTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGc                                                        >  2:46961/1‑140 (MQ=255)

                                                                        tttCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCa                                                       <  2:1211917/140‑1 (MQ=255)

                                                                          tCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGt                                                     <  1:426070/140‑1 (MQ=255)

                                                                          tCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGt                                                     >  2:290602/1‑140 (MQ=255)

                                                                            tGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGc                                                   >  1:272874/1‑140 (MQ=255)

                                                                            tGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGc                                                   >  1:50922/1‑140 (MQ=255)

                                                                             gACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCa                                                  <  2:1183462/140‑1 (MQ=255)

                                                                              aCCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCaa                                                 >  1:1383719/1‑140 (MQ=255)

                                                                               ccTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAag                                                >  1:1062703/1‑140 (MQ=255)

                                                                                       ggCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATa                                        <  2:892544/140‑1 (MQ=255)

                                                                                          aTAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAg                                     <  1:1187478/140‑1 (MQ=255)

                                                                                           tAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGc                                    <  2:386567/140‑1 (MQ=255)

                                                                                            aGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGcc                                   >  1:1052176/1‑140 (MQ=255)

                                                                                             gAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCt                                  <  1:1105030/140‑1 (MQ=255)

                                                                                             gAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCt                                  <  2:1062703/140‑1 (MQ=255)

                                                                                                  tataTGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTg                             >  1:1148634/1‑140 (MQ=255)

                                                                                                   atatGTATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGa                            >  2:923938/1‑140 (MQ=255)

                                                                                                        tATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGctc                       >  2:817644/1‑140 (MQ=255)

                                                                                                        tATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGctc                       >  2:516355/1‑140 (MQ=255)

                                                                                                        tATCGTAATCGTATCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGctc                       >  1:201830/1‑140 (MQ=255)

                                                                                                          tcgtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCtt                     >  2:1202487/1‑140 (MQ=255)

                                                                                                          tcgtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCtt                     >  2:155724/1‑140 (MQ=255)

                                                                                                          tcgtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCtt                     >  2:1265344/1‑140 (MQ=255)

                                                                                                           cgtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTg                    >  1:1196647/1‑140 (MQ=255)

                                                                                                           cgtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTg                    >  2:638333/1‑140 (MQ=255)

                                                                                                           cgtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTg                    >  1:1476048/1‑140 (MQ=255)

                                                                                                           cgtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTg                    >  1:1394354/1‑140 (MQ=255)

                                                                                                           cgtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTg                    >  2:1344097/1‑140 (MQ=255)

                                                                                                            gtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATg                          <  2:1394456/133‑1 (MQ=255)

                                                                                                            gtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATg                          >  1:1394456/1‑133 (MQ=255)

                                                                                                            gtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGa                   >  1:474969/1‑140 (MQ=255)

                                                                                                            gtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGa                   >  2:84965/1‑140 (MQ=255)

                                                                                                            gtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGa                   <  2:474969/140‑1 (MQ=255)

                                                                                                            gtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGa                   >  2:484136/1‑140 (MQ=255)

                                                                                                            gtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGa                   <  2:1296231/140‑1 (MQ=255)

                                                                                                            gtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGa                   >  2:226382/1‑140 (MQ=255)

                                                                                                            gtaatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGa                   >  2:1160852/1‑140 (MQ=255)

                                                                                                             taatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGAt                  >  1:742742/1‑140 (MQ=255)

                                                                                                              aatcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGAtt                 <  2:50922/140‑1 (MQ=255)

                                                                                                                tcgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGAtttt               >  2:296019/1‑140 (MQ=255)

                                                                                                                 cgtaTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTc              >  1:462125/1‑140 (MQ=255)

                                                                                                                   taTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCAt            <  1:1160852/140‑1 (MQ=255)

                                                                                                                   taTCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCAt            <  1:83277/140‑1 (MQ=255)

                                                                                                                     tCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATTg          <  1:1265344/140‑1 (MQ=255)

                                                                                                                     tCCCTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATTg          >  1:1440372/1‑140 (MQ=255)

                                                                                                                      cccTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATTgg         <  1:1131623/140‑1 (MQ=255)

                                                                                                                        cTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATTGGTa       <  2:272874/140‑1 (MQ=255)

                                                                                                                        cTTTATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATTGGTa       <  2:1394354/140‑1 (MQ=255)

                                                                                                                          ttATTTCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCTTGATGCTCTTGAtttt               <  2:1400139/130‑1 (MQ=255)

                                                                                                                             tttCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATTGGTAGtctc  <  2:250177/140‑1 (MQ=255)

                                                                                                                             tttCGCCGGAGCACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATTGGTAGtctc  <  1:516355/140‑1 (MQ=255)

ATCAACTGAATCATCGATTCCTGGCCCGAAGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCACATGCACTTTCTGACCTTTTTTGGCATAGAAGGTATATGTATCGTAATCGTATCCCTTTATTTCGCCGGAGTACTGAGCGCTGCTATGGCCTTTTCTGAACTCAACATTGACATTCTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATTGGTAGTCTC  >  NC_000913/1227218‑1227482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`