Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,706,044	G→A	R93H (CGC→CAC)	rsxA →	SoxR [2Fe‑2S] reducing system protein RsxA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,706,044	0	G	A	100.0%	183.8 / NA	52	R93H (CGC→CAC)	rsxA	SoxR [2Fe‑2S] reducing system protein RsxA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (31/21);  total (31/21)

GCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCGCAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGCACAATTTCTTGCAGTCGGCGCTGTAC  >  NC_000913/1705916‑1706174                                                                                                                                 |                                                                                                                                   gCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGcc                                                                                                                         <  2:760378/140‑1 (MQ=255)               gcgcCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGt                                                                                                           >  1:251144/1‑140 (MQ=255)                  ccTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTctg                                                                                                        >  2:1219443/1‑140 (MQ=255)                    tGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTctgct                                                                                                      >  2:568144/1‑140 (MQ=255)                    tGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTctgct                                                                                                      >  2:1457620/1‑140 (MQ=255)                      gCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTgg                                                                                                    >  2:1183239/1‑140 (MQ=255)                                 cGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTg                                                                                         >  1:1006512/1‑140 (MQ=255)                                 cGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTg                                                                                         >  1:1378624/1‑140 (MQ=255)                                    ggATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCg                                                                                      <  1:1219443/140‑1 (MQ=255)                                     gATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGc                                                                                     >  1:1013223/1‑140 (MQ=255)                                          tGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATc                                                                                <  1:568144/140‑1 (MQ=255)                                            aTCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTa                                                                                  <  1:1470581/136‑1 (MQ=255)                                            aTCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTa                                                                                  >  2:1470581/1‑136 (MQ=255)                                             tCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATcacc                                                                             <  1:121405/140‑1 (MQ=255)                                             tCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATcacc                                                                             <  1:1183239/140‑1 (MQ=255)                                             tCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATcacc                                                                             <  2:251144/140‑1 (MQ=255)                                             ccccACTTAATCTGATTTACCTGCGAACCCTGGAATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCAAAAGACCAGTCCGGTGCTTTACCGTCTGCTGGGGATTTTTCTGCCGCTTATcacc                                                                             <  2:1013223/139‑1 (MQ=255)                                               ccACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATcaccac                                                                           <  2:726666/140‑1 (MQ=255)                                                cACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCaccacc                                                                          >  2:1241554/1‑140 (MQ=255)                                                 aCTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCAccacca                                                                         >  2:546249/1‑140 (MQ=255)                                                  cTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCaa                                                                        <  1:1241554/140‑1 (MQ=255)                                                  cTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCaa                                                                        >  2:681799/1‑140 (MQ=255)                                                  cTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCaa                                                                        <  1:154020/140‑1 (MQ=255)                                                       tCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACtgtg                                                                   <  2:655796/140‑1 (MQ=255)                                                       tCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACtgtg                                                                   >  1:253386/1‑140 (MQ=255)                                                            tttACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTg                                                              >  2:1033075/1‑140 (MQ=255)                                                               aCCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACtgtg                                                                   >  1:114931/1‑132 (MQ=255)                                                               aCCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACtgtg                                                                   <  2:114931/132‑1 (MQ=255)                                                                ccTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCg                                                          >  2:1346755/1‑140 (MQ=255)                                                                   gcgcACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCggcg                                                       <  1:1033075/140‑1 (MQ=255)                                                                     gcACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCggcgtg                                                     >  1:427553/1‑140 (MQ=255)                                                                     gcACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCggcgtg                                                     >  1:74481/1‑140 (MQ=255)                                                                      cACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCggcgtgg                                                    >  2:143676/1‑140 (MQ=255)                                                                         ccTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCggcgtggcgt                                                 <  1:1346755/140‑1 (MQ=255)                                                                          cTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGtt                                                >  1:751198/1‑140 (MQ=255)                                                                           tGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTg                                               >  2:372753/1‑140 (MQ=255)                                                                             gCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCA‑CAACTGTGCAGTGCTCGGCGTGGCGTTGCTg                                            <  2:1378624/140‑1 (MQ=255)                                                                              cATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTg                                            <  1:200233/140‑1 (MQ=255)                                                                                   aTTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAatat                                       >  1:1132600/1‑140 (MQ=255)                                                                                   aTTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAatat                                       >  1:472165/1‑140 (MQ=255)                                                                                   aTTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCATGGCGTTGCTGAatat                                       >  1:85915/1‑140 (MQ=255)                                                                                       tGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAAt                                   >  1:777390/1‑140 (MQ=255)                                                                                              tGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGc                            >  2:1252518/1‑140 (MQ=255)                                                                                               gCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGca                           <  1:923896/140‑1 (MQ=255)                                                                                                 tgtgGTCGTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGcaca                         <  1:546249/140‑1 (MQ=255)                                                                                                     gTCGTGCAGTTCACCGAGATGCTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGCACAAttt                     >  2:1412596/1‑140 (MQ=255)                                                                                                        gTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGCACAATTTCtt                  <  2:427553/140‑1 (MQ=255)                                                                                                        gTGCAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGCACAATTTCtt                  >  1:377113/1‑140 (MQ=255)                                                                                                           cAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGCACAATTTCTTGCa               >  2:1468856/1‑140 (MQ=255)                                                                                                           cAGTTCACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGCACAATTTCTTGCa               >  2:1323238/1‑140 (MQ=255)                                                                                                                cACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGCACAATTTCTTGCAGTCgg          <  2:1281780/140‑1 (MQ=255)                                                                                                                cACCGAGATGGTGGTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGCACAATTTCTTGCAGTCgg          <  1:1457620/140‑1 (MQ=255)                                                                                                                        tggtggTGCACAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGCACAATTTCTTGCAGTCGGCGCTGTAc  >  2:1876/1‑140 (MQ=255)                                                                                                                                 |                                                                                                                                   GCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCGCAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCGGCGTGGCGTTGCTGAATATCAATCTCGGGCACAATTTCTTGCAGTCGGCGCTGTAC  >  NC_000913/1705916‑1706174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑