Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,240,120 (C)5→4 coding (177/1245 nt) sstT → serine/threonine:Na(+) symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,240,1160C.100.0% 416.0 / NA 92coding (173/1245 nt)sstTserine/threonine:Na(+) symporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (45/47);  total (45/47)

GTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTGCCCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTCTGCTGCTCTGGCCGCAGTAGTCT  >  NC_000913/3239978‑3240247
                                                                                                                                          |                                                                                                                                     
gTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTGcc                                                                                                                                      <  1:801334/140‑1 (MQ=255)
   tGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTGcccca                                                                                                                                   >  2:242269/1‑139 (MQ=255)
       tCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTAAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCt                                                                                                                              <  1:1361492/140‑1 (MQ=255)
         aTGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTgg                                                                                                                            >  2:1447422/1‑140 (MQ=255)
          tGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGgt                                                                                                                           >  2:1432927/1‑140 (MQ=255)
           ggCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGgtg                                                                                                                          >  1:351337/1‑140 (MQ=255)
           ggCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGgtg                                                                                                                          >  1:240935/1‑140 (MQ=255)
            gCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGgtgt                                                                                                                         <  2:780226/140‑1 (MQ=255)
               gCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGa                                                                                                                      >  2:1597613/1‑140 (MQ=255)
               gCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGa                                                                                                                      >  2:273614/1‑140 (MQ=255)
                ccTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGAt                                                                                                                     >  2:571782/1‑140 (MQ=255)
                ccTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGAt                                                                                                                     >  1:1188892/1‑140 (MQ=255)
                     tAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTg‑‑g                                                                                                              >  1:77830/1‑140 (MQ=255)
                     tAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTg‑‑g                                                                                                              >  1:1362888/1‑140 (MQ=255)
                         accaaTCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGAt                                                                                                          <  1:1313577/137‑1 (MQ=255)
                          cAAATCCTGGTCGGCTTTGTTCTGGGGATTCTTCTGACATGGATCTCAAAGCCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCAACCTGGTGTTGATGCTG‑‑GTGATg                                                                                                         <  2:763070/140‑1 (MQ=255)
                             aTCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAGGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCa                                                                                                      >  2:525216/1‑140 (MQ=255)
                             aTCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCa                                                                                                      >  1:45278/1‑140 (MQ=255)
                             aTCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCa                                                                                                      <  1:1097449/140‑1 (MQ=255)
                              tCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCAt                                                                                                     <  1:62831/140‑1 (MQ=255)
                              tCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCAt                                                                                                     <  1:117074/140‑1 (MQ=255)
                              tCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCAt                                                                                                     >  2:50523/1‑140 (MQ=255)
                              tCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCAt                                                                                                     >  2:413220/1‑140 (MQ=255)
                              tCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCAt                                                                                                     >  1:111894/1‑140 (MQ=255)
                                  ggTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTAt                                                                                                 <  1:214375/140‑1 (MQ=255)
                                   gTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTAtt                                                                                                >  2:1539233/1‑140 (MQ=255)
                                     cGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGc                                                                                              <  1:223575/140‑1 (MQ=255)
                                      ggCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCt                                                                                             <  2:141419/140‑1 (MQ=255)
                                      ggCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCt                                                                                             <  1:912942/140‑1 (MQ=255)
                                      ggCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCt                                                                                             <  1:1354104/140‑1 (MQ=255)
                                                  gggATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGTTAACCACCAGCAc                                                                                 <  2:1188892/140‑1 (MQ=255)
                                                  gggATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTATCCACCAGCAc                                                                                 >  2:233267/1‑140 (MQ=255)
                                                  gggATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCAc                                                                                 >  2:1290612/1‑140 (MQ=255)
                                                  gggATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCAc                                                                                 >  1:6398/1‑140 (MQ=255)
                                                  gggATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCAc                                                                                 >  2:1009356/1‑140 (MQ=255)
                                                  gggATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCAc                                                                                 >  2:839640/1‑140 (MQ=255)
                                                  gggATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCAc                                                                                 >  1:1482456/1‑140 (MQ=255)
                                                       tcttctGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCa                                                                            <  2:301188/140‑1 (MQ=255)
                                                       tcttctGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCa                                                                            >  1:1363449/1‑140 (MQ=255)
                                                       tcttctGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCa                                                                            >  2:1098973/1‑140 (MQ=255)
                                                       tcttctGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCa                                                                            >  1:1500569/1‑140 (MQ=255)
                                                       tcttctGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCa                                                                            >  2:206469/1‑140 (MQ=255)
                                                         ttctGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGa                                                                          <  2:1251289/140‑1 (MQ=255)
                                                         ttctGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGa                                                                          <  1:1416213/140‑1 (MQ=255)
                                                              gCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAAcc                                                                     >  2:1549933/1‑140 (MQ=255)
                                                                   gATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAatat                                                                <  2:1096888/140‑1 (MQ=255)
                                                                        cAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGcc                                                           <  2:393484/140‑1 (MQ=255)
                                                                        cAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGcc                                                           <  1:690868/140‑1 (MQ=255)
                                                                             cccGCGGCGGAGGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTAtt                                                      <  1:525216/140‑1 (MQ=255)
                                                                             cccGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTAtt                                                      >  1:895652/1‑140 (MQ=255)
                                                                             cccGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTAtt                                                      >  2:815274/1‑140 (MQ=255)
                                                                             cccGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTAtt                                                      >  1:275777/1‑140 (MQ=255)
                                                                               cgcgGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTAtttt                                                    <  1:262187/140‑1 (MQ=255)
                                                                               cgcgGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTAtttt                                                    <  1:273614/140‑1 (MQ=255)
                                                                               cgcgGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTAtttt                                                    <  1:642220/140‑1 (MQ=255)
                                                                                gcggcgGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTGGTGTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTAttt                                                     >  2:967860/1‑140 (MQ=255)
                                                                                gcggcgGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTg                                                   >  2:628691/1‑140 (MQ=255)
                                                                                gcggcgGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTg                                                   >  2:1373571/1‑140 (MQ=255)
                                                                                gcggcgGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTg                                                   <  1:105333/140‑1 (MQ=255)
                                                                                gcggcgGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTg                                                   <  1:413220/140‑1 (MQ=255)
                                                                                gcggcgGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTg                                                   <  1:1597613/140‑1 (MQ=255)
                                                                                gcggcgGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTg                                                   <  1:1432927/140‑1 (MQ=255)
                                                                                gcggcgGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTg                                                   <  1:1539233/140‑1 (MQ=255)
                                                                                gcggcgGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTg                                                   <  2:111894/140‑1 (MQ=255)
                                                                                  ggcggAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGtt                                                 <  2:45278/140‑1 (MQ=255)
                                                                                  ggcggAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGtt                                                 <  1:571782/140‑1 (MQ=255)
                                                                                    cggAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTGGTGTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGtt                                                 <  1:967860/140‑1 (MQ=255)
                                                                                     ggAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCct                                              <  2:1192746/140‑1 (MQ=255)
                                                                                       aaGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCctct                                            <  1:1159645/140‑1 (MQ=255)
                                                                                         gCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCtctat                                          <  2:1500569/140‑1 (MQ=255)
                                                                                              tGGTCTGTTAGGTGCTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACt                                     <  1:967010/140‑1 (MQ=255)
                                                                                              tGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACt                                     >  2:1137130/1‑140 (MQ=255)
                                                                                                  cTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGc                                 <  2:1242495/140‑1 (MQ=255)
                                                                                                   tGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCa                                >  1:503415/1‑140 (MQ=255)
                                                                                                       aGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCtt                            <  2:6398/140‑1 (MQ=255)
                                                                                                       aGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCtt                            >  1:39592/1‑140 (MQ=255)
                                                                                                       aGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCtt                            <  1:242269/140‑1 (MQ=255)
                                                                                                       aGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCtt                            >  2:484066/1‑140 (MQ=255)
                                                                                                       aGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCtt                            <  1:839640/140‑1 (MQ=255)
                                                                                                           aCTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTctct                        >  2:738612/1‑140 (MQ=255)
                                                                                                            cTTTGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTctg                       >  2:861805/1‑140 (MQ=255)
                                                                                                             tttGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTctgc                      >  1:712417/1‑140 (MQ=255)
                                                                                                               tGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTctgctg                    >  1:964330/1‑140 (MQ=255)
                                                                                                               tGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTctgctg                    >  2:1537689/1‑140 (MQ=255)
                                                                                                               tGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTctgctg                    >  2:70102/1‑140 (MQ=255)
                                                                                                               tGTTCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTctgctg                    >  2:815632/1‑140 (MQ=255)
                                                                                                                 ttCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTCTgctgct                  <  2:1482456/140‑1 (MQ=255)
                                                                                                                 ttCGTCGGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTCTgctgct                  >  2:1175705/1‑140 (MQ=255)
                                                                                                                     tcgGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTCTGCTGCTCTgg              <  1:1447422/140‑1 (MQ=255)
                                                                                                                      cgGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTCTGCTGCTCTGGc             <  2:1362888/140‑1 (MQ=255)
                                                                                                                      cgGCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTCTGCTGCTCTGGc             <  2:77830/140‑1 (MQ=255)
                                                                                                                       ggCGCACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTCTGCTGCTCTGGcc            >  1:1426628/1‑140 (MQ=255)
                                                                                                                           cACTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTCTGCTGCTCTGGCCGCag        <  1:1009356/140‑1 (MQ=255)
                                                                                                                             cTGAAAGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTCTGCTGCTCTGGCCGCagta      <  1:1549933/140‑1 (MQ=255)
                                                                                                                                 aaGCCGTTG‑CCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTCTGCTGCTCTGGCCGCAGTAGTCt  <  2:39592/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                     
GTCTGGCTCATGGCAGCCTGGTAAAACAAATCCTGGTCGGCCTTGTTCTGGGGATTCTTCTGGCATGGATCTCAAAACCCGCGGCGGAAGCTGTTGGTCTGTTAGGTACTTTGTTCGTCGGCGCACTGAAAGCCGTTGCCCCCATCCTGGTGTTGATGCTG‑‑GTGATGGCATCTATTGCTAACCACCAGCACGGGCAGAAAACCAATATCCGCCCTATTTTGTTCCTCTATCTACTGGGCACCTTCTCTGCTGCTCTGGCCGCAGTAGTCT  >  NC_000913/3239978‑3240247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑