| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,098,155 | 0 | A | C | 35.1% | 167.6 / 24.2 | 94 | L140F (TTA→TTC) | rhaS | DNA‑binding transcriptional activator RhaS |
| Reads supporting (aligned to +/- strand): ref base A (37/24); new base C (0/33); total (37/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.27e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCG > NC_000913/4098024‑4098291 | gggCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGAc < 2:527091/140‑1 (MQ=255) gAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCa < 1:293911/140‑1 (MQ=255) aaTCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGCCCGCCAg > 2:669790/1‑140 (MQ=255) aaTCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAg < 1:12744/140‑1 (MQ=255) aTCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGt < 1:720522/140‑1 (MQ=255) tCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTc < 1:529694/140‑1 (MQ=255) ggTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACGGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTcgc < 2:1038348/139‑1 (MQ=255) aGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTcgc < 1:199808/140‑1 (MQ=255) aGTTCCTGCAACAAGAGCTGGATGGGCAGTATCCGTCTCACGGGCGCGTTACCCACCGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGCAAAATGATTTACCCTCGACCGCCAGTcgc < 2:633350/140‑1 (MQ=255) gTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTcgcg < 1:121773/140‑1 (MQ=255) ttGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCga > 1:845653/1‑140 (MQ=255) gctgcCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCgaga > 1:760380/1‑140 (MQ=255) ctgcCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGAt < 1:871537/140‑1 (MQ=255) ctgcCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGAt < 2:1449452/140‑1 (MQ=255) tgcCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATc > 2:1088716/1‑140 (MQ=255) tgcCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATc > 2:1108297/1‑140 (MQ=255) tgcCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATc > 2:987644/1‑140 (MQ=255) tgcCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATc > 1:1316637/1‑140 (MQ=255) tgcCACAAGAGCTGGATGGGCAATATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATc > 2:621802/1‑140 (MQ=255) tgcCACAAGAGCTGGATGGGCAATATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATc > 2:952057/1‑140 (MQ=255) gcCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCt > 2:421524/1‑140 (MQ=255) acaAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGt < 2:473928/140‑1 (MQ=255) acaAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGt > 2:965692/1‑140 (MQ=255) acaAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCACCAGGTGCGACTGCTGGTTGCACAGATGGAA‑CAGCAGGAATGGGACAACGATTTACCCTCGACCGCCAGTCGCGAGATCTTGt > 2:715512/1‑140 (MQ=255) caAGGGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGtt < 2:837447/140‑1 (MQ=255) caAGAGCTGGATGGGCAGTATCCGTCTCACTGGCTCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGtt < 2:21773/140‑1 (MQ=255) caAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGtt < 2:563686/140‑1 (MQ=255) caAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGtt < 1:115967/140‑1 (MQ=255) caAGAGCTGGATGGGCAGTATCCGCCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGtt < 2:857875/140‑1 (MQ=255) aaagttcTGGATGGGCAATATCGGTTTCACTGGCGTTTTAACCACAGGGTTTTGCAGCGGGTGGGACAGCTGGTGGCACAGAAGCGA‑AGCCAGGAGGGGGAAAAGTATTAGCCCGCTACCGCCAGTCGCGAGATCTTGtt < 2:1401957/134‑1 (MQ=255) agagCGGGAGGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTa < 2:126918/140‑1 (MQ=255) gagCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTAt < 1:421524/140‑1 (MQ=255) gCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGAAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGc < 2:1358584/140‑1 (MQ=255) gCTGGAGGGGCAGTATCCGTCTCACTGGCGCGTTAACCACGGGGTATTGCAGGAGGTGCGACAGCGGGTTGAACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGc < 2:490901/140‑1 (MQ=255) gATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAAtt < 1:900558/140‑1 (MQ=255) gATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAAtt < 1:213888/140‑1 (MQ=255) aTGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTa < 2:1123224/140‑1 (MQ=255) aTGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTa > 1:1343367/1‑140 (MQ=255) gCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGc < 1:1014490/140‑1 (MQ=255) aTCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCGGGTGCGACAGCTGGTGGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTtg < 2:1170048/140‑1 (MQ=255) aTCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTtg > 2:959667/1‑140 (MQ=255) tCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTtgc > 1:301751/1‑140 (MQ=255) cGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTtgctg < 1:1459333/140‑1 (MQ=255) cGTCCCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTtgctg < 1:967255/140‑1 (MQ=255) tctcACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCg > 2:214662/1‑140 (MQ=255) tctcACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCg > 2:839931/1‑140 (MQ=255) cACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAACGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTaa < 2:1307717/140‑1 (MQ=255) aCTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTaaa > 2:48375/1‑140 (MQ=255) aCTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTaaa > 2:1200153/1‑140 (MQ=255) gcgcGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCa < 1:816776/140‑1 (MQ=255) gcgcGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCa < 2:1515184/140‑1 (MQ=255) gcgcGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCa < 2:1208851/140‑1 (MQ=255) gcgcGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCa < 2:198922/140‑1 (MQ=255) gcgcGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCa < 1:1301671/140‑1 (MQ=255) gcgcGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCa < 1:840196/140‑1 (MQ=255) gcgcGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCa < 1:1187761/140‑1 (MQ=255) gcgcGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCa < 1:58978/140‑1 (MQ=255) gcgcGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCa < 1:1092259/140‑1 (MQ=255) gTTACCCACAGCGTATTGCAGCGGGTGCGACAGCTGGTTGCACAGAGGGAA‑CAGCGGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGttt < 2:500241/140‑1 (MQ=255) ttAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTg > 1:1518944/1‑140 (MQ=255) tAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGc > 1:1284419/1‑140 (MQ=255) ccACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAgg < 1:66227/140‑1 (MQ=255) ccACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAgg < 2:845653/140‑1 (MQ=255) gCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAAc > 2:1397092/1‑140 (MQ=255) gCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAAc < 1:131940/140‑1 (MQ=255) cGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAAcc > 1:762312/1‑140 (MQ=255) cGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAAcc > 2:766052/1‑140 (MQ=255) cGTATTGCAGCAGGTGCGACAGCTGGGTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAAcc > 2:1337288/1‑140 (MQ=255) gTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCt < 2:1060282/140‑1 (MQ=255) tATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTg < 2:1299892/140‑1 (MQ=255) aTTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTgg > 1:1008868/1‑140 (MQ=255) aTTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTgg > 2:203486/1‑140 (MQ=255) gcagGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACa < 2:289875/140‑1 (MQ=255) ggTGCGACAGCTGGTTGCATAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAgcg > 2:2713/1‑140 (MQ=255) ggTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAgcg > 1:1201382/1‑140 (MQ=255) ggTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAgcg > 1:1530695/1‑140 (MQ=255) ggTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAgcg > 1:321352/1‑140 (MQ=255) tGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCa > 1:1434091/1‑140 (MQ=255) gCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCAt < 1:784993/140‑1 (MQ=255) gCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCAt > 2:835966/1‑140 (MQ=255) cGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATc < 1:987644/140‑1 (MQ=255) cGAAAGCTGGTTGCACAGATGGAA‑CAGCAGGAGGGGAAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATc < 1:965692/140‑1 (MQ=255) gACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCa < 2:647969/140‑1 (MQ=255) aGCTGGTTGCAGAG‑TGGAACCAGCGGAAAGGGGAAAATGATTTACCCCCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGt < 2:446692/140‑1 (MQ=255) tGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACt < 1:1088716/140‑1 (MQ=255) caGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCt < 1:1287327/140‑1 (MQ=255) ggagggAA‑CGGCAGGGAGGGGAAAATGATTTCCCCTCGTCCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCtt < 2:397879/136‑1 (MQ=255) ggATGAAA‑CAGCAGGAAGGGAAAATTGTTTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCtt < 1:315566/139‑1 (MQ=255) aGATGGAA‑CAGCAGGAGGGGAAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCtt < 2:319028/140‑1 (MQ=255) aGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCtt < 1:214662/140‑1 (MQ=255) tGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTctg > 1:23239/1‑140 (MQ=255) gAA‑CAGCAGGAGGGGAAAAAGGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTctggc < 1:669790/140‑1 (MQ=255) gAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTctggc < 1:1037349/140‑1 (MQ=255) gAA‑CAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTctggc < 2:1343367/140‑1 (MQ=255) gAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTctggc < 1:1121980/140‑1 (MQ=255) a‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTctggcct > 2:567271/1‑140 (MQ=255) aGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTggagg > 1:355365/1‑140 (MQ=255) gAAAATGATTTCCCCCCGTCCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCa < 2:1316637/140‑1 (MQ=255) tGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTg > 1:786854/1‑140 (MQ=255) tttACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCg > 2:788283/1‑140 (MQ=255) | GGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAA‑CAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCG > NC_000913/4098024‑4098291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |