Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG36.1% 203.6 / 33.0 122T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (26/50);  new base G (43/0);  total (72/50)
Fisher's exact test for biased strand distribution p-value = 1.72e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 132 total aligned reads displayed.

GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568369‑4568643
                                                                                                                                        |                                                                                                                                               
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTtaaa                                                                                                                                             >  2:915248/1‑140 (MQ=255)
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaa                                                                                                                                             >  2:235466/1‑140 (MQ=255)
  gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaaa                                                                                                                                           >  1:658934/1‑140 (MQ=255)
  gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaaaa                                                                                                                                           >  2:1602421/1‑140 (MQ=255)
   ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaaaa                                                                                                                                          >  2:1574107/1‑140 (MQ=255)
    cAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGTaaaaaaa                                                                                                                                          >  1:152102/1‑140 (MQ=255)
     aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaaaaaaa                                                                                                                                        >  1:1328271/1‑138 (MQ=255)
     aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGAGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACg                                                                                                                                        <  1:973366/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaaaaaaatg                                                                                                                                      >  2:140195/1‑136 (MQ=255)
          gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCa                                                                                                                                   >  1:1092936/1‑140 (MQ=255)
           aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTGAAAAAAAGTGGCac                                                                                                                                  >  2:749463/1‑139 (MQ=255)
           aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑t                                                                                                                                 >  1:802108/1‑140 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGGGGCATGGC‑GGCTCTAAAAAAGtcgtaaa                                                                                                                                 >  1:679414/1‑134 (MQ=255)
             aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGGGGCA‑Taa                                                                                                                               >  1:1138749/1‑140 (MQ=255)
              tCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGGA‑Taaa                                                                                                                              >  1:1309807/1‑139 (MQ=255)
                ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCA‑Taacaa                                                                                                                            >  2:1497952/1‑140 (MQ=255)
                ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCAT‑‑C‑GGGTAAAAAAACGTGGCA‑Taacaaac                                                                                                                          >  1:1191377/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCA‑Taacaaa                                                                                                                           >  1:1009315/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCA‑Taacaaa                                                                                                                           >  2:1096030/1‑140 (MQ=255)
                     tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAATGGCA‑AAacaaaa‑aaa                                                                                                                      >  2:586029/1‑139 (MQ=255)
                       aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTc                                                                                                                    <  2:415057/140‑1 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTcc                                                                                                                   <  1:249448/140‑1 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTcc                                                                                                                   <  1:140195/140‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑CAACAAAC‑AACTCCTTGt                                                                                                               <  1:1082229/140‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCA‑TAAAAAAA‑AACTCCCTGt                                                                                                               >  1:1511734/1‑140 (MQ=255)
                             cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAATGGGA‑CAACAAAA‑AACTCCTTTT‑c                                                                                                             >  2:943216/1‑140 (MQ=255)
                               tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑ATCTCCTTGT‑CCg                                                                                                           <  2:45289/140‑1 (MQ=255)
                                   acaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGGA‑AAAAAAAC‑AAACCCCTGT‑CCGggga                                                                                                       >  2:2205/1‑140 (MQ=255)
                                    caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGaa                                                                                                      >  1:236983/1‑140 (MQ=255)
                                    caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGaa                                                                                                      <  2:1405411/140‑1 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGCGGCA‑TAAAAAAA‑AAACCCCTGT‑CCGGAGAAACCC‑CACg                                                                                             >  2:298095/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCA‑TAACAAAA‑AACCCCCTGT‑CCGGAGAAACCC‑CACg                                                                                             >  1:439959/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACgggg                                                                                          >  1:614140/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCA‑TAAAAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑CACcggg                                                                                          >  1:1485821/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGCGGGA‑TAAAAAAC‑AACCCCCTGC‑GCGGGGAAACCC‑aaaaggg                                                                                          >  2:895023/1‑135 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGCAAAAAAACCCGGGA‑TAACAAAC‑AACTCCCTGT‑CCGGAGAAACCC‑CACgggg                                                                                          >  1:911475/1‑140 (MQ=255)
                                                 aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTGAAAAAACCCGGCC‑TAACAAAC‑AAATCCCTGG‑CCCGGGAACCCC‑CAAggggga                                                                                        >  1:1333941/1‑138 (MQ=255)
                                                 aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCCTGT‑CCGGAGAACCCC‑AACggggga                                                                                        >  1:1276751/1‑138 (MQ=255)
                                                 aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGGGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGaa                                                                                        >  1:1389024/1‑140 (MQ=255)
                                                  ggCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGaaa                                                                                       >  1:279831/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑GAAAAAAC‑AACACCTTGT‑CCCGGGAACCCC‑AAAGGGGaaaa                                                                                      >  1:1203461/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGGA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGgaaa                                                                                      >  1:646610/1‑140 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACg                                                                                    <  2:1092936/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACg                                                                                    <  2:220197/140‑1 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGaa                                                                                  >  1:1244260/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGGGGCA‑TAACAAAA‑AAATCCTTTT‑CCGGAGAAACCC‑AACGGGGGAAAAGaa                                                                                  >  1:284692/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAAGGGCA‑TAACAAAC‑AACTCCTTGT‑CCCGGGAACCCC‑AACGGGGAAAAAGaa                                                                                  >  2:142362/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGAAAAAAAACGTGGCG‑TAAAAAAA‑AACAACCTTT‑CCAGAGAACCCC‑CAAAGGGGAAACGaa                                                                                  >  2:32630/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCACTAACAAA‑‑AACCACCCGT‑CCGGGGCGCCCCAAACGGGGaaaccaca                                                                                  >  2:1244930/1‑135 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGGGGCA‑TAACCAAA‑AACCCCCTCT‑CCGGAGAACCCC‑CACCCGGGAAACCaaa                                                                                 >  2:706341/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCA‑TAAAAAAC‑AACCCCCTGT‑CCCGGGAACCCC‑CACGGGGGAAAAGaaa                                                                                 >  2:531550/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGCGGCA‑TAACAAAC‑AACTCCTCGTCCCGGGGACCCCC‑AACGGGAAAAACaaa                                                                                  >  2:464958/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAAGGGCA‑TAAAAAAC‑AACTCCCTGT‑CCGGAGAACCCC‑AACGGGGGAAAAGaaa                                                                                 >  1:1556031/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCaa                                                                            <  1:235466/140‑1 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGCGGCA‑TAACAAAA‑AACCCCCTGT‑CCGGGGAACCCC‑AACGGGGGAAACGAAAATCaa                                                                            >  2:1422398/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCaa                                                                            >  1:587772/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCA‑TAACAAAA‑AACACCTTGT‑CCGGAGGACCCC‑CACGGGGGAAACGAAATTCaa                                                                            >  2:6635/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGGGGCA‑TAACAAAA‑AACTCCTTGT‑CCGGAGAAACCC‑AACGGGGGAAAAGAAAATCaa                                                                            >  1:435363/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCA‑TAAAAAAA‑AAACCCCTTT‑CCCGGGAAACCC‑CACGGGGGAAAAGAAAATCaa                                                                            >  2:1598958/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAACGGGCA‑TAACAAAC‑AACCCCTTGG‑CCGGGGAACCCC‑CACGGGGGAAAAAAAAATCaa                                                                            >  2:1261888/1‑140 (MQ=255)
                                                               ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGCGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑CACGGGGAAAACGAAATTCAATa                                                                          >  1:798141/1‑140 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGGA‑TAACAAAA‑AACTCCTTGT‑CCGGGGGACCCC‑CACGGGGGAAACGAAAATCAAAAccc                                                                       >  2:1106332/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGGA‑TAACAAAC‑AACTCCTTGT‑CCGGGGAACCCC‑CACGGGGGAAAAGAAAATCAAAACCg                                                                       >  2:1393412/1‑140 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGCGGGA‑TAAAAAAA‑AACTCCTTGT‑CCGGAGAACCCC‑CACGGGGGAAAAGAAAATGAATAccc                                                                       >  2:1469487/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGGG‑AAAAAAAA‑AAATCCCTTT‑TCGGGGAACCCC‑AACGGGGGAAACGAAAATTAATAccc                                                                       >  2:1123192/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTAATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCA‑TAACAAAC‑AACACCTTGT‑CCGGGGAACCCC‑CACGGGGAAAACGAAAATCAATAccc                                                                       >  1:1483371/1‑139 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCA‑TAAAAAAA‑AACCCCTTGT‑CCGGAGAACCCC‑CACGGGGGAAAAGAAAATCAATAACGTCGGGaa                                                                >  2:789601/1‑140 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAACGGCA‑TAAAAAAA‑AACCCCCTGT‑CCCGAGAACCCC‑AACGGGGGAAAAGAAAATCAAAACCGTCGGGaa                                                                >  2:1259682/1‑140 (MQ=255)
                                                                            cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGa                                                             <  1:1574107/140‑1 (MQ=255)
                                                                            cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGA‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGa                                                             <  1:497179/140‑1 (MQ=255)
                                                                              cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                           <  2:236983/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                        <  1:1176716/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                      <  2:1338942/140‑1 (MQ=255)
                                                                                      tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                   <  1:531550/140‑1 (MQ=255)
                                                                                      tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                   <  2:34349/140‑1 (MQ=255)
                                                                                       cATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCA‑TAAAAAAA‑AAAACCTTTT‑CCGGAGAACCCC‑CAAGGGGAAAAAGAAAATCAATACCCTCGGTAATGACGAAAAGCAgg                                                  >  2:1225768/1‑140 (MQ=255)
                                                                                        aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                                 <  1:433658/140‑1 (MQ=255)
                                                                                        aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                                 <  1:915248/140‑1 (MQ=255)
                                                                                        aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                                 <  1:179744/140‑1 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                           <  1:1269064/140‑1 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGGGGGA‑TAACAAAA‑AAATCCTTGT‑CCGGCGAACCCC‑CACGGGGGAAAAAAAAATCAATACCCGCGGGAATGACGAAAAGCAAGGGAGAAggg                                         >  2:401357/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCA‑TAACAAAA‑AACACCCTGT‑CCGGGGAACCCC‑CACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAAGCAGGGGGGAAagg                                         >  2:766873/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGCAAAAAAAAGAGGGC‑TAACAAACAAACCCCTTTC‑CCGGGGACCCCC‑ACCGGGGAAAAAAAAATTCAA‑ACCGTCCGGTATCACGAAAAGCCGGTGTGAAagg                                         >  2:1164887/1‑140 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                      <  1:1123192/140‑1 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc                                     <  2:662848/140‑1 (MQ=255)
                                                                                                     gCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACg                                    <  1:1106332/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGGGGCG‑TAAAAAAC‑AACTCCTTTT‑CCGGAGAACCCC‑CACGGGGGAAACGAAAATCAATACCGTCGGGAAAGACGAAAAGCAGGGGAGAAGGGGAACGAGAc                                >  2:298249/1‑140 (MQ=255)
                                                                                                           gggAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                              <  1:1142802/140‑1 (MQ=255)
                                                                                                            ggAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGc                             <  2:1333941/140‑1 (MQ=255)
                                                                                                              aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                           <  1:1393412/140‑1 (MQ=255)
                                                                                                                aaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATGCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                         <  1:716164/140‑1 (MQ=255)
                                                                                                                      cGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCA‑TAACAAAA‑AACCCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGGAATGACGAAAAGCAGGGGGGAAGGGGAACGAGACTGCAAAAGTACTg                   >  2:123303/1‑140 (MQ=255)
                                                                                                                         ggcggcATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAt                <  2:1517766/140‑1 (MQ=255)
                                                                                                                          gcggcATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGTAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAtt               <  2:152102/140‑1 (MQ=255)
                                                                                                                            ggcATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCGC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc             <  2:133699/140‑1 (MQ=255)
                                                                                                                               aTGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg          <  2:279831/140‑1 (MQ=255)
                                                                                                                                 ggC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTTCTGAATTTCATGTa        <  1:481940/140‑1 (MQ=255)
                                                                                                                                 ggC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  2:646610/140‑1 (MQ=255)
                                                                                                                                 ggC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACAGCAAATGTACTGAATTTCATGTa        <  1:857999/140‑1 (MQ=255)
                                                                                                                                      ggTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa    <  1:293320/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                               
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCA‑TAACAAAC‑AACTCCTTGT‑CCGGAGAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568369‑4568643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑