Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,431,974	A→G	T976A (ACC→GCC)	stfR →	Rac prophage; putative membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,431,974	0	A	G	100.0%	355.4 / NA	94	T976A (ACC→GCC)	stfR	Rac prophage; putative membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (54/40);  total (54/40)

AATCTGCTTACCCGAAACTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCGGCTGGAGCACA  >  NC_000913/1431840‑1432110                                                                                                                                       |                                                                                                                                         aaTCTGCTTACCCGAAACTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCcac                                                                                                                                     >  1:968236/1‑140 (MQ=255) aaTCTGCTTACCCGAAACTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCcac                                                                                                                                     >  2:1292941/1‑140 (MQ=255) aaTCTGCTTACCCGAAACTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCATATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCcac                                                                                                                                     >  2:1566042/1‑140 (MQ=255)     tGCTTACCCGAAACTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCAcagcg                                                                                                                                 <  1:601007/140‑1 (MQ=255)     tGCTTACCCGAAACTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCAcagcg                                                                                                                                 >  1:151371/1‑140 (MQ=255)     tGCTTACCCGAAACTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCAcagcg                                                                                                                                 >  1:1402019/1‑140 (MQ=255)          aCCCGAAACTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCAcagcgccagc                                                                                                                            <  2:1321520/140‑1 (MQ=255)             cGAAACTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCa                                                                                                                         <  2:369059/140‑1 (MQ=255)               aaaCTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATc                                                                                                                       <  2:1366908/140‑1 (MQ=255)               aaaCTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATc                                                                                                                       >  1:1185922/1‑140 (MQ=255)               aaaCTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATc                                                                                                                       <  1:693595/140‑1 (MQ=255)                 aCTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCa                                                                                                                     >  1:374483/1‑140 (MQ=255)                 aCTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCa                                                                                                                     <  1:220146/140‑1 (MQ=255)                            cTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTg                                                                                                          >  2:1089459/1‑140 (MQ=255)                               aTCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGACTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTgggg                                                                                                       <  2:1274061/140‑1 (MQ=255)                                 ccGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGAc                                                                                                     <  1:732178/140‑1 (MQ=255)                                 ccGTCAGGCGTGATCCCTGATATGCGTGCCTGGACGATTAAGGGCAAACCTGCCAGTCGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTCCAGATTTGGGGAc                                                                                                     <  2:274554/140‑1 (MQ=255)                                  cGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACg                                                                                                    <  2:1539901/140‑1 (MQ=255)                                   gTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGa                                                                                                   >  2:467446/1‑140 (MQ=255)                                     cAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGACCAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGaaa                                                                                                 >  2:1566328/1‑140 (MQ=255)                                      aGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGaaaa                                                                                                >  2:339811/1‑140 (MQ=255)                                       ggCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAAc                                                                                               >  1:1178093/1‑140 (MQ=255)                                        gCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAAcc                                                                                              <  1:459335/140‑1 (MQ=255)                                           tGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACcaca                                                                                           >  1:228694/1‑140 (MQ=255)                                                  tGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATcgtcgt                                                                                    >  2:1350202/1‑140 (MQ=255)                                                  tGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATcgtcgt                                                                                    >  1:924682/1‑140 (MQ=255)                                                    atatGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGTATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGttt                                                                                  <  2:885344/140‑1 (MQ=255)                                                    atatGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGCACAGATTTGGGGACGAAAACCACATCGTCGttt                                                                                  <  1:523909/140‑1 (MQ=255)                                                         cGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTa                                                                             <  2:374483/140‑1 (MQ=255)                                                         cGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTa                                                                             >  2:653196/1‑140 (MQ=255)                                                         cGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTa                                                                             >  1:775952/1‑140 (MQ=255)                                                          gTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTAc                                                                            >  1:1048602/1‑140 (MQ=255)                                                          gTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTAc                                                                            >  2:780223/1‑140 (MQ=255)                                                          gTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTAc                                                                            <  2:1464428/140‑1 (MQ=255)                                                           tGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACg                                                                           <  2:1402019/140‑1 (MQ=255)                                                              cTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGcc                                                                        >  2:872794/1‑139 (MQ=255)                                                              cTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCa                                                                        >  1:1434237/1‑140 (MQ=255)                                                              cTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCa                                                                        >  2:58890/1‑140 (MQ=255)                                                              cTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCa                                                                        <  1:105010/140‑1 (MQ=255)                                                              cTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCa                                                                        >  1:1431019/1‑140 (MQ=255)                                                                 gACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTa                                                                     >  2:921715/1‑140 (MQ=255)                                                                      ttAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGGTTACGGCACTAAATcc                                                                >  1:843927/1‑140 (MQ=255)                                                                      ttAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATcc                                                                <  2:1455945/140‑1 (MQ=255)                                                                      ttAAGGGCAAACCTGCCAGTGATCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATcc                                                                <  2:1095828/140‑1 (MQ=255)                                                                         aGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACg                                                             <  2:1563635/140‑1 (MQ=255)                                                                            gCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAAt                                                          >  2:221689/1‑140 (MQ=255)                                                                                aCCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAaca                                                      >  1:1378487/1‑140 (MQ=255)                                                                                aCCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAaca                                                      >  2:1199874/1‑140 (MQ=255)                                                                                aCCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAaca                                                      >  2:1110579/1‑140 (MQ=255)                                                                                aCCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAaca                                                      >  2:1000373/1‑140 (MQ=255)                                                                                aCCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAaca                                                      >  2:795722/1‑140 (MQ=255)                                                                                aCCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAaca                                                      >  1:700257/1‑140 (MQ=255)                                                                                 ccTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAacac                                                     <  1:1343019/140‑1 (MQ=255)                                                                                 ccTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAacac                                                     <  2:935999/140‑1 (MQ=255)                                                                                    gCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCgg                                                  <  1:1391815/140‑1 (MQ=255)                                                                                      cAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCgggg                                                <  1:1471268/140‑1 (MQ=255)                                                                                      cAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCgggg                                                <  1:198451/140‑1 (MQ=255)                                                                                      cAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCgggg                                                <  2:151371/140‑1 (MQ=255)                                                                                      cAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCgggg                                                <  1:898343/140‑1 (MQ=255)                                                                                      cAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCgggg                                                <  1:1292941/140‑1 (MQ=255)                                                                                      cAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCgggg                                                <  1:1089459/140‑1 (MQ=255)                                                                                      cAGTGGCCGGGCCGTATTGTCTCAGGAACAGGACGACATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACGCCgggg                                                <  2:1511472/140‑1 (MQ=255)                                                                                        gTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGca                                              <  1:35274/140‑1 (MQ=255)                                                                                        gTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGca                                              <  2:843927/140‑1 (MQ=255)                                                                                          ggTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGcaca                                            >  2:35269/1‑140 (MQ=255)                                                                                          ggTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGcaca                                            <  1:263677/140‑1 (MQ=255)                                                                                            tCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATa                                          >  2:25094/1‑140 (MQ=255)                                                                                              gggCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATaca                                        >  1:580124/1‑140 (MQ=255)                                                                                               ggCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATacac                                       >  2:107941/1‑140 (MQ=255)                                                                                               ggCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATacac                                       >  2:374689/1‑140 (MQ=255)                                                                                                gCCGTATTGGCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATacaca                                      <  2:846775/140‑1 (MQ=255)                                                                                                   gTATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAg                                   >  2:398388/1‑140 (MQ=255)                                                                                                    tATTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAgt                                  >  1:1019804/1‑140 (MQ=255)                                                                                                     aTTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAgtg                                 >  1:870674/1‑140 (MQ=255)                                                                                                     aTTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAgtg                                 >  1:1355674/1‑140 (MQ=255)                                                                                                     aTTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAgtg                                 >  2:457333/1‑140 (MQ=255)                                                                                                     aTTGTCTCAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAgtg                                 >  1:979273/1‑140 (MQ=255)                                                                                                         tctcAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAg                             <  2:722436/140‑1 (MQ=255)                                                                                                            cAGGAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCgg                          <  2:968236/140‑1 (MQ=255)                                                                                                              ggAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGct                        >  2:1324042/1‑140 (MQ=255)                                                                                                              ggAACAGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGACGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGcc                        >  2:836183/1‑139 (MQ=255)                                                                                                                   aGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACa                   >  1:1005261/1‑140 (MQ=255)                                                                                                                   aGGACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACa                   >  2:1535506/1‑140 (MQ=255)                                                                                                                     gACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACaaa                 >  2:640862/1‑140 (MQ=255)                                                                                                                     gACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACaaa                 >  2:108440/1‑140 (MQ=255)                                                                                                                     gACGGCATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACaaa                 >  1:187847/1‑140 (MQ=255)                                                                                                                          cATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCgg            >  2:664767/1‑140 (MQ=255)                                                                                                                          cATTAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCgg            >  2:1089560/1‑140 (MQ=255)                                                                                                                             tAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACATCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCGGCTg         <  2:1185922/140‑1 (MQ=255)                                                                                                                             tAAATCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCGGCTg         >  2:869499/1‑140 (MQ=255)                                                                                                                                aTCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCGGCTGGAg      <  2:1048602/140‑1 (MQ=255)                                                                                                                                aTCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCGGCTGGAg      <  1:443754/140‑1 (MQ=255)                                                                                                                                aTCGCATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCGGCTGGAg      <  2:775952/140‑1 (MQ=255)                                                                                                                                    cATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCGGCTGGAGcaca  <  1:966024/140‑1 (MQ=255)                                                                                                                                    cATGCCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCGGCTGGAGcaca  >  2:1373760/1‑140 (MQ=255)                                                                                                                                       |                                                                                                                                         AATCTGCTTACCCGAAACTTGCAGCCGCTTATCCGTCAGGCGTGATCCCTGATATGCGTGGCTGGACGATTAAGGGCAAACCTGCCAGTGGTCGGGCCGTATTGTCTCAGGAACAGGACGGCATTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCGGCTGGAGCACA  >  NC_000913/1431840‑1432110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑