BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,776,424	T→C	L13L (CTT→CTC)	yfjY →	CP4‑57 prophage; RadC‑like JAB domain‑containing protein YfjY

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,776,424	0	T	C	100.0%	428.0 / NA	112	L13L (CTT→CTC)	yfjY	CP4‑57 prophage; RadC‑like JAB domain‑containing protein YfjY
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (79/33); total (79/33)

Only 100 of 115 total aligned reads displayed.

ATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCTGGAGCGTGA  >  NC_000913/2776287‑2776561

aTGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTccc                                                                                                                                         <  2:1195486/140‑1 (MQ=255)

 tGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCa                                                                                                                                        >  2:750444/1‑140 (MQ=255)

 tGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCa                                                                                                                                        >  2:697285/1‑140 (MQ=255)

  gCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCAc                                                                                                                                       <  2:184063/140‑1 (MQ=255)

     aTGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACTTGTACTCCCACTGa                                                                                                                                    >  1:1310534/1‑140 (MQ=255)

     aTGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGa                                                                                                                                    >  2:1090024/1‑140 (MQ=255)

     aTGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGa                                                                                                                                    >  1:687605/1‑140 (MQ=255)

       gCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGAcc                                                                                                                                  <  1:1409645/140‑1 (MQ=255)

                gAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGc                                                                                                                         <  1:782596/140‑1 (MQ=255)

                gAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGATACTCCCACTGACCGCACAACGc                                                                                                                         >  2:1275146/1‑140 (MQ=255)

                  gCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCAc                                                                                                                       >  2:583333/1‑140 (MQ=255)

                   cACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACg                                                                                                                      >  1:934136/1‑140 (MQ=255)

                      tATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTa                                                                                                                   >  2:497307/1‑140 (MQ=255)

                         tACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTaaaa                                                                                                                <  1:497307/140‑1 (MQ=255)

                              ccTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACgcgc                                                                                                           >  2:739754/1‑140 (MQ=255)

                              ccTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACgcgc                                                                                                           >  2:1555856/1‑140 (MQ=255)

                              ccTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACgcgc                                                                                                           >  2:422949/1‑140 (MQ=255)

                                tGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCt                                                                                                         >  1:841430/1‑140 (MQ=255)

                                tGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCt                                                                                                         >  1:638518/1‑140 (MQ=255)

                                tGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCt                                                                                                         >  2:366920/1‑140 (MQ=255)

                                tGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCt                                                                                                         >  1:1234086/1‑140 (MQ=255)

                                tGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCt                                                                                                         >  1:800552/1‑140 (MQ=255)

                                tGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCt                                                                                                         >  1:1042278/1‑140 (MQ=255)

                                  cGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTa                                                                                                       >  2:1444642/1‑140 (MQ=255)

                                  cGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTa                                                                                                       >  1:390640/1‑140 (MQ=255)

                                  cGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTa                                                                                                       >  2:1238066/1‑140 (MQ=255)

                                  cGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTa                                                                                                       >  1:157051/1‑140 (MQ=255)

                                  cGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTa                                                                                                       >  2:863336/1‑140 (MQ=255)

                                   gggATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTaa                                                                                                      <  2:521390/140‑1 (MQ=255)

                                          tgCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACgctgct                                                                                               <  1:464324/139‑1 (MQ=255)

                                          cGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACgctgct                                                                                               <  2:1174101/140‑1 (MQ=255)

                                               tGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGAcc                                                                                          >  2:25758/1‑140 (MQ=255)

                                               tGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGAcc                                                                                          >  1:1407844/1‑140 (MQ=255)

                                               tGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGAcc                                                                                          >  1:1191696/1‑140 (MQ=255)

                                                    caCCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGacac                                                                                     <  1:288691/140‑1 (MQ=255)

                                                         tGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATCCTCATGATGGAACAGTCACTCATCCCACAGGCACCGGTACTGCCACTGACCGCACAACGCACGGCAAAACGCGCCTTAAGGCACCTTGTACGGAACCTgcg                                                                                >  2:1439394/1‑140 (MQ=255)

                                                         tGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTgcg                                                                                >  2:1338869/1‑140 (MQ=255)

                                                         tGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTgcg                                                                                >  1:964832/1‑140 (MQ=255)

                                                         tGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTgcg                                                                                >  1:180678/1‑140 (MQ=255)

                                                           aaTCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGcgcg                                                                              <  2:1310534/140‑1 (MQ=255)

                                                              ccAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCTCTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGaaa                                                                           <  1:921412/140‑1 (MQ=255)

                                                              ccAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGaaa                                                                           <  1:483172/140‑1 (MQ=255)

                                                                aGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACa                                                                         >  1:1065358/1‑140 (MQ=255)

                                                                 gcgcCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAg                                                                        >  1:816060/1‑140 (MQ=255)

                                                                      aTTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTg                                                                   <  2:432462/140‑1 (MQ=255)

                                                                         aTGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCa                                                                <  2:1200379/140‑1 (MQ=255)

                                                                           gcgcATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCAtt                                                              <  2:756361/140‑1 (MQ=255)

                                                                           gcgcATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCAtt                                                              <  2:1234086/140‑1 (MQ=255)

                                                                                    tGATTAAGGATACTCATGATGTAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCAc                                                     >  2:380874/1‑140 (MQ=255)

                                                                                      aTTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTc                                                   >  2:22034/1‑140 (MQ=255)

                                                                                      aTTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTc                                                   >  2:1458926/1‑140 (MQ=255)

                                                                                      aTTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTc                                                   >  1:864977/1‑140 (MQ=255)

                                                                                      aTTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCACCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTc                                                   >  2:75082/1‑140 (MQ=255)

                                                                                         aaGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAgg                                                <  2:1290603/140‑1 (MQ=255)

                                                                                         aaGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAgg                                                <  2:1042278/140‑1 (MQ=255)

                                                                                         aaGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAgg                                                <  2:841430/140‑1 (MQ=255)

                                                                                           ggATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCGCCTCCACTCAGgct                                              >  2:1363271/1‑140 (MQ=255)

                                                                                             aTACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGgctgc                                            >  2:1425742/1‑140 (MQ=255)

                                                                                              tACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCCCTCAGgctgct                                           <  2:638518/140‑1 (MQ=255)

                                                                                                cTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCg                                         >  2:981298/1‑140 (MQ=255)

                                                                                                cTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCg                                         >  2:227041/1‑140 (MQ=255)

                                                                                                 tCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGt                                        >  1:1351000/1‑140 (MQ=255)

                                                                                                 tCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGt                                        >  1:1594928/1‑140 (MQ=255)

                                                                                                    tgatgGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGAc                                     >  1:196411/1‑140 (MQ=255)

                                                                                                     gatgGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACt                                    >  2:940206/1‑140 (MQ=255)

                                                                                                     gatgGAACAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACt                                    >  1:1075326/1‑140 (MQ=255)

                                                                                                          aaCAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGgctg                               >  2:1490353/1‑140 (MQ=255)

                                                                                                          aaCAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGCGACTGgctg                               >  2:1543533/1‑140 (MQ=255)

                                                                                                           aCAGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGgctgg                              >  2:1491446/1‑139 (MQ=255)

                                                                                                             aGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGgctgaag                            >  2:782635/1‑140 (MQ=255)

                                                                                                             aGTCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGgctgaag                            >  2:37509/1‑140 (MQ=255)

                                                                                                               tCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGgctgaagct                          >  2:1092588/1‑140 (MQ=255)

                                                                                                               tCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGgctgaagct                          >  2:1563343/1‑140 (MQ=255)

                                                                                                               tCACTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGgctgaagct                          >  2:187333/1‑140 (MQ=255)

                                                                                                                cACTCATCCCACAGACACCAGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGgctgaagctg                         >  1:566430/1‑140 (MQ=255)

                                                                                                                 aCTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGgctgaagctga                        >  2:1540063/1‑140 (MQ=255)

                                                                                                                 aCTCATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGgctgaagctga                        >  1:1201474/1‑140 (MQ=255)

                                                                                                                    cATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGaaaa                     >  2:1166282/1‑140 (MQ=255)

                                                                                                                    cATCCCACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGaaaa                     >  2:342845/1‑140 (MQ=255)

                                                                                                                       cccACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATgg                  <  2:390640/140‑1 (MQ=255)

                                                                                                                       cccACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATgg                  <  1:1338869/140‑1 (MQ=255)

                                                                                                                       cccACAGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCGGCTTGACCGACGCCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATgg                  <  2:800552/140‑1 (MQ=255)

                                                                                                                         cacaGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCg                <  2:1285682/140‑1 (MQ=255)

                                                                                                                         cacaGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCg                >  1:625682/1‑140 (MQ=255)

                                                                                                                         cacaGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCg                <  1:366920/140‑1 (MQ=255)

                                                                                                                         cacaGACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCg                >  2:727603/1‑140 (MQ=255)

                                                                                                                             gACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGc            >  2:1485124/1‑140 (MQ=255)

                                                                                                                             gACACCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGc            >  2:1234397/1‑140 (MQ=255)

                                                                                                                              acacCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCt           <  2:394444/140‑1 (MQ=255)

                                                                                                                              acacCGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCt           <  1:940206/140‑1 (MQ=255)

                                                                                                                               cacCGGGACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCTg          >  1:1544139/1‑140 (MQ=255)

                                                                                                                                 ccGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGcccgg        >  2:966646/1‑136 (MQ=255)

                                                                                                                                 ccGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCTggg        >  1:85726/1‑139 (MQ=255)

                                                                                                                                 ccGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCTGGa        >  2:202342/1‑140 (MQ=255)

                                                                                                                                 ccGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCTGGa        <  2:196411/140‑1 (MQ=255)

                                                                                                                                 ccGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCTGGa        >  1:651740/1‑140 (MQ=255)

                                                                                                                                 ccGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCTGGa        >  2:612875/1‑140 (MQ=255)

                                                                                                                                  cGGTACTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCgggggccggg       >  2:1052221/1‑134 (MQ=255)

                                                                                                                                      aCTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCTGGAGCGTg   <  2:1191696/140‑1 (MQ=255)

                                                                                                                                      aCTCCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCT‑CACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCTGGAGCGTga  <  1:1238066/140‑1 (MQ=255)

ATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGGCGGGGCTGGAGCGTGA  >  NC_000913/2776287‑2776561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`