BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	342,414	C→T	D430D (GAC→GAT)	yahJ →	putative deaminase with metallo‑dependent hydrolase domain

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	342,414	0	C	T	100.0%	481.5 / NA	137	D430D (GAC→GAT)	yahJ	putative deaminase with metallo‑dependent hydrolase domain
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (67/70); total (67/70)

Only 100 of 139 total aligned reads displayed.

CAGCTCTATATTCGTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGACGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTT  >  NC_000913/342277‑342549

cAGCTCTATATTCGTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGc                                                                                                                                       >  1:681936/1‑140 (MQ=255)

 aGCTCTATATTCGTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGcc                                                                                                                                      >  1:1073210/1‑140 (MQ=255)

 aGCTCTATATTCGTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGcc                                                                                                                                      <  1:912283/140‑1 (MQ=255)

 aGCTCTATATTCGTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGcc                                                                                                                                      <  1:1172008/140‑1 (MQ=255)

 aGCTCTATATTCGTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGcc                                                                                                                                      >  1:265472/1‑140 (MQ=255)

 aGCTCTATATTCGTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGcc                                                                                                                                      >  1:539365/1‑140 (MQ=255)

  gCTCTATATTCGTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGcct                                                                                                                                     >  2:1574381/1‑140 (MQ=255)

             ggccTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGCATTGCCGCTGAATGAAAAAGGCGAGCGTGCATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGGGGATGCCTCCTGTTccgcc                                                                                                                          >  2:803304/3‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  2:488573/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  2:377559/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  2:431387/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  2:30743/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  2:24140/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  1:623895/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  2:128936/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  1:891649/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  2:1218982/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  1:977699/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  1:1023240/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  2:815776/1‑140 (MQ=255)

             gTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgcc                                                                                                                          >  1:1263969/1‑140 (MQ=255)

              tCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTccgccg                                                                                                                         >  1:811743/1‑140 (MQ=255)

               ccTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGa                                                                                                                        >  2:768839/1‑140 (MQ=255)

                cTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAg                                                                                                                       >  1:1545830/1‑140 (MQ=255)

                cTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAg                                                                                                                       >  2:352356/1‑140 (MQ=255)

                cTAACGAACAGAACCTCTCCCGCTCGCTG‑TTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAgg                                                                                                                      >  2:1327570/1‑140 (MQ=255)

                    cGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCgg                                                                                                                   <  1:835374/140‑1 (MQ=255)

                     gAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGt                                                                                                                  <  2:274021/140‑1 (MQ=255)

                      aaCAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTg                                                                                                                 <  2:381956/140‑1 (MQ=255)

                        cAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGgc                                                                                                               <  1:1552935/140‑1 (MQ=255)

                         aGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGgcg                                                                                                              >  1:303957/1‑140 (MQ=255)

                             ccTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTa                                                                                                          >  1:1444545/1‑140 (MQ=255)

                                ctcCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTAtct                                                                                                       >  1:1222463/1‑140 (MQ=255)

                                ctcCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTAtct                                                                                                       >  2:566163/1‑140 (MQ=255)

                                ctcCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTAtct                                                                                                       >  1:1349569/1‑140 (MQ=255)

                                    cgctcgctGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGcc                                                                                                   <  2:31336/140‑1 (MQ=255)

                                     gctcgctGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCg                                                                                                  >  1:149228/1‑140 (MQ=255)

                                     gctcgctGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCg                                                                                                  >  1:219684/1‑140 (MQ=255)

                                     gctcgctGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCg                                                                                                  >  1:1450813/1‑140 (MQ=255)

                                        cgctGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCgaga                                                                                               >  2:125243/1‑140 (MQ=255)

                                        cgctGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCgaga                                                                                               >  1:967562/1‑140 (MQ=255)

                                        cgctGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGCTGCGCGGATCTCGCCgaga                                                                                               >  1:1597357/1‑140 (MQ=255)

                                            gTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCg                                                                                           <  2:1073210/140‑1 (MQ=255)

                                              ttttAGCCACTGGCGATGTATTGCCGCTGAATGAAAACGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCa                                                                                         <  1:1273526/140‑1 (MQ=255)

                                              ttttAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACcaca                                                                                         <  1:699612/140‑1 (MQ=255)

                                              ttttAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCa                                                                                         <  1:1093151/140‑1 (MQ=255)

                                              ttttAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCa                                                                                         <  1:594938/140‑1 (MQ=255)

                                              ttttAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCa                                                                                         <  1:485085/140‑1 (MQ=255)

                                              ttttAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCa                                                                                         <  1:461429/140‑1 (MQ=255)

                                                ttAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAAc                                                                                       <  2:635548/140‑1 (MQ=255)

                                                 tAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACg                                                                                      <  2:623895/140‑1 (MQ=255)

                                                       cTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCCACGTTccct                                                                                >  1:1023787/1‑138 (MQ=255)

                                                        tGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATa                                                                               <  1:1372724/140‑1 (MQ=255)

                                                                tATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCaa                                                                       >  2:981813/1‑140 (MQ=255)

                                                                 aTTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAAc                                                                      <  1:431387/140‑1 (MQ=255)

                                                                 aTTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAAc                                                                      <  2:1444545/140‑1 (MQ=255)

                                                                 aTTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAAc                                                                      <  2:425378/140‑1 (MQ=255)

                                                                 aTTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAAc                                                                      <  2:539365/140‑1 (MQ=255)

                                                                 aTTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAAc                                                                      <  1:276461/140‑1 (MQ=255)

                                                                 aTTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAAc                                                                      <  2:379729/140‑1 (MQ=255)

                                                                 aTTGCCGCTGAATGAAAAAGGCGAGCGTGTAGGGCCAAAAGCGCAGGAGGACGCCAGCTTTGTGCGGGGGGATGGCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAAc                                                                      <  2:470910/140‑1 (MQ=255)

                                                                   tGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTg                                                                    <  1:1318028/140‑1 (MQ=255)

                                                                     ccGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTggg                                                                  >  2:1298820/1‑139 (MQ=255)

                                                                     ccGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGgt                                                                  <  1:128936/140‑1 (MQ=255)

                                                                        cTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGtgtg                                                               >  2:789794/1‑140 (MQ=255)

                                                                         tgaatgaaAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTgg                                                              <  2:1580853/140‑1 (MQ=255)

                                                                          gaatgaaAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTggg                                                             <  1:768839/140‑1 (MQ=255)

                                                                          gaatgaaAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTggg                                                             >  1:951985/1‑140 (MQ=255)

                                                                          gaatgaaAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTggg                                                             >  1:1068677/1‑140 (MQ=255)

                                                                             tgaaAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGTTGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGa                                                          <  2:605080/140‑1 (MQ=255)

                                                                             tgaaAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGa                                                          <  2:1263969/140‑1 (MQ=255)

                                                                             tgaaAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTACCTCGCTGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGa                                                          <  2:748172/140‑1 (MQ=255)

                                                                                  aaGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGtgtg                                                     <  2:1545830/140‑1 (MQ=255)

                                                                                  aaGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGtgtg                                                     <  1:1411309/140‑1 (MQ=255)

                                                                                         gCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGtt                                              >  1:1533243/1‑140 (MQ=255)

                                                                                             gtATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATg                                          <  1:566163/140‑1 (MQ=255)

                                                                                             gtATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATg                                          <  2:11460/140‑1 (MQ=255)

                                                                                               aTGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATgcg                                        >  2:1437051/1‑140 (MQ=255)

                                                                                               aTGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATgcg                                        <  2:989255/140‑1 (MQ=255)

                                                                                                      aaaGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGa                                 <  2:175329/140‑1 (MQ=255)

                                                                                                      aaaGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGGGTGGGGGAGGGCGGCAGGTTGATGCGCATTTGa                                 >  2:402122/1‑140 (MQ=255)

                                                                                                       aaGCGCAGGATGACGCCAGCTTTGTGTTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGaa                                >  1:91678/1‑140 (MQ=255)

                                                                                                       aaGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGaa                                >  2:704451/1‑140 (MQ=255)

                                                                                                       aaGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGaa                                >  1:999520/1‑140 (MQ=255)

                                                                                                       aaGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGaa                                <  1:488573/140‑1 (MQ=255)

                                                                                                       aaGCGCAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGGTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGGTGGTGCGCATTTGaa                                >  2:1054099/1‑140 (MQ=255)

                                                                                                         gcgcAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAAc                              <  2:1068970/140‑1 (MQ=255)

                                                                                                            cAGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGcc                           >  1:249335/1‑140 (MQ=255)

                                                                                                             aGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCt                          >  2:53719/1‑140 (MQ=255)

                                                                                                             aGGATGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCt                          >  2:1251633/1‑140 (MQ=255)

                                                                                                                aTGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCa                       <  1:228613/140‑1 (MQ=255)

                                                                                                                aTGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCa                       <  2:531575/140‑1 (MQ=255)

                                                                                                                 tGACGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCaa                      <  1:994227/140‑1 (MQ=255)

                                                                                                                    cGCCAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACgg                   >  1:754246/1‑140 (MQ=255)

                                                                                                                      ccAGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGTGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTg                 <  1:353511/140‑1 (MQ=255)

                                                                                                                        aGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGaa               <  1:311287/140‑1 (MQ=255)

                                                                                                                        aGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGaa               <  1:375277/140‑1 (MQ=255)

                                                                                                                        aGCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGaa               <  2:303957/140‑1 (MQ=255)

                                                                                                                         gCTTTGTGCTGGTGGATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTAGATGCGCATTTGAAACGCCTGCAACGGTGAAt              <  1:125243/140‑1 (MQ=255)

                                                                                                                                     tggATGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGAttt  <  1:451622/140‑1 (MQ=255)

CAGCTCTATATTCGTCCTAACGAACAGAACCTCTCCCGCTCGCTGTTTTTAGCCACTGGCGATGTATTGCCGCTGAATGAAAAAGGCGAGCGTGTATGGCCAAAAGCGCAGGATGACGCCAGCTTTGTGCTGGTGGACGCCTCCTGTTCCGCCGAGGCGGTGGCGCGTATCTCGCCGAGAACCGCAACGTTCCATAAAGGGCAACTGGTGTGGGGGAGTGTGGCAGGTTGATGCGCATTTGAAACGCCTGCAACGGTGAATAGTAAGAGATTT  >  NC_000913/342277‑342549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`