Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,151,963 T→C T8A (ACG→GCG)  exbB ← Ton complex subunit ExbB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,151,9630TC100.0% 241.8 / NA 65T8A (ACG→GCG) exbBTon complex subunit ExbB
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (28/37);  total (28/37)

CTGATTGAAGAACTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGTCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTACCT  >  NC_000913/3151832‑3152086
                                                                                                                                   |                                                                                                                           
cTGATTGAAGAACTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTa                                                                                                                     <  1:475329/140‑1 (MQ=255)
        agaaCTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAAttatta                                                                                                             >  2:772305/1‑140 (MQ=255)
        agaaCTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAAttatta                                                                                                             >  1:658146/1‑140 (MQ=255)
        agaaCTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAAttatta                                                                                                             >  2:1203057/1‑140 (MQ=255)
          aaCTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTAcc                                                                                                           <  1:263183/140‑1 (MQ=255)
           aCTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTAccc                                                                                                          <  2:155952/140‑1 (MQ=255)
            ctctACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCa                                                                                                         <  1:1020230/140‑1 (MQ=255)
            ctctACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCa                                                                                                         <  2:488624/140‑1 (MQ=255)
             tctACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCAc                                                                                                        <  2:1002753/140‑1 (MQ=255)
             tctACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCAc                                                                                                        <  2:702705/140‑1 (MQ=255)
               tACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTa                                                                                                                     <  2:57356/125‑1 (MQ=255)
               tACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTa                                                                                                                     >  1:57356/1‑125 (MQ=255)
               tACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACtg                                                                                                      <  2:658146/140‑1 (MQ=255)
                 cGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACtgtg                                                                                                    <  2:1197245/140‑1 (MQ=255)
                       tACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAattat                                                                                                               <  2:640787/123‑1 (MQ=255)
                       tACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAattat                                                                                                               >  1:640787/1‑123 (MQ=255)
                       tACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACtgtg                                                                                                    <  2:57297/134‑1 (MQ=255)
                       tACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACtgtg                                                                                                    >  1:57297/1‑134 (MQ=255)
                       tACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTAtctc                                                                                              >  2:1180813/1‑140 (MQ=255)
                        aCTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTcc                                                                                             >  2:301038/1‑140 (MQ=255)
                        aCTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTcc                                                                                             >  2:261953/1‑140 (MQ=255)
                              gaagaTTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACg                                                                                       <  1:261953/140‑1 (MQ=255)
                              gaagaTTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACg                                                                                       <  1:301038/140‑1 (MQ=255)
                                agaTTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCa                                                                                     >  1:556752/1‑140 (MQ=255)
                                agaTTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCa                                                                                     >  2:350960/1‑140 (MQ=255)
                                 gaTTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCaa                                                                                    <  2:1141620/140‑1 (MQ=255)
                                                tACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCt                                                                        >  1:717168/1‑137 (MQ=255)
                                                tACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCt                                                                        <  2:717168/137‑1 (MQ=255)
                                                tACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTgcg                                                                     >  2:564440/1‑140 (MQ=255)
                                                     aGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCataa                                                                >  1:825575/1‑140 (MQ=255)
                                                       gCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCataata                                                              >  1:456578/1‑140 (MQ=255)
                                                          aaaaTAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCataataata                                                           >  1:1045885/1‑140 (MQ=255)
                                                          aaaaTAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCataataata                                                           >  2:1130598/1‑140 (MQ=255)
                                                                 gCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAac                                                    >  2:708864/1‑140 (MQ=255)
                                                                  cccAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAacg                                                   <  2:825575/140‑1 (MQ=255)
                                                                      atcatcACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGt                                               <  1:564440/140‑1 (MQ=255)
                                                                       tcatcaCGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTc                                              <  2:549906/140‑1 (MQ=255)
                                                                         atcaCGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATAAAAACGACGTCGa                                            <  2:1045885/140‑1 (MQ=255)
                                                                              gCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGa                                       <  2:87554/140‑1 (MQ=255)
                                                                               cACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGAt                                      >  2:1125050/1‑140 (MQ=255)
                                                                                aCTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATa                                     <  1:708864/140‑1 (MQ=255)
                                                                                 cTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAg                                    >  2:1353/1‑140 (MQ=255)
                                                                                   tAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTc                                  >  2:975139/1‑140 (MQ=255)
                                                                                   tAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTc                                  >  1:147880/1‑140 (MQ=255)
                                                                                      cGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGtt                               <  1:772305/140‑1 (MQ=255)
                                                                                      cGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGtt                               <  1:1125050/140‑1 (MQ=255)
                                                                                      cGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGtt                               <  2:456578/140‑1 (MQ=255)
                                                                                        aCAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTtct                             <  1:92816/140‑1 (MQ=255)
                                                                                            tatCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCAtt                         <  2:1068892/140‑1 (MQ=255)
                                                                                              tCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTAc                       <  1:975139/140‑1 (MQ=255)
                                                                                                 gCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTAt                    <  2:147880/140‑1 (MQ=255)
                                                                                                 gCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTAt                    <  2:310301/140‑1 (MQ=255)
                                                                                                 gCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTAt                    <  1:1203057/140‑1 (MQ=255)
                                                                                                   gTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTAttt                  <  1:1353/140‑1 (MQ=255)
                                                                                                      cTGATACATTCCCCAGACCGAAAGGTCCGCCTGCATTAAATTATTTCCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCa               <  2:556752/140‑1 (MQ=255)
                                                                                                      cTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCa               <  1:1180813/140‑1 (MQ=255)
                                                                                                       tGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCAt              <  1:293481/140‑1 (MQ=255)
                                                                                                               acCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGt      >  2:518808/1‑140 (MQ=255)
                                                                                                                ccccAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCa               >  2:370650/1‑130 (MQ=255)
                                                                                                                ccccAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCa               <  1:370650/130‑1 (MQ=255)
                                                                                                                ccccAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTa     <  1:518808/140‑1 (MQ=255)
                                                                                                                   cAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTACCt  >  1:1233300/1‑140 (MQ=255)
                                                                                                                   cAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTACCt  >  2:417076/1‑140 (MQ=255)
                                                                                                                   cAGACGGAAAGGTCCGCCTGCATTAAATTATTACACACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTACCt  >  2:221433/1‑140 (MQ=255)
                                                                                                                     gACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGc         <  2:749036/131‑1 (MQ=255)
                                                                                                                     gACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGc         >  1:749036/1‑131 (MQ=255)
                                                                                                                                   |                                                                                                                           
CTGATTGAAGAACTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGTCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTACCT  >  NC_000913/3151832‑3152086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: