Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,594,256	(C)8→7	pseudogene (3831/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,594,249	0	C	.	100.0%	307.4 / NA	71	pseudogene (3838/5422 nt)	yneO	AIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (39/32);  total (39/32)

CGACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTGG  >  NC_000913/1594113‑1594380                                                                                                                                         |                                                                                                                                    cGACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcccc                                                                                                                                  <  2:935734/140‑1 (MQ=255)  gACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTccccc                                                                                                                                 <  1:401296/140‑1 (MQ=255)              cccccccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcg                                                                                                                    <  2:775542/140‑1 (MQ=255)                cccccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcccc                                                                                                                                  <  2:315370/125‑1 (MQ=255)                cccccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcccc                                                                                                                                  >  1:315370/1‑125 (MQ=255)                   ccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTa                                                                                                               <  1:678537/140‑1 (MQ=255)                   ccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTa                                                                                                               <  1:783888/140‑1 (MQ=255)                   ccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTa                                                                                                               <  1:987836/140‑1 (MQ=255)                     aGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgtcg                                                                                                                 >  2:380144/1‑136 (MQ=255)                     aGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgtcg                                                                                                                 <  1:380144/136‑1 (MQ=255)                     aGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTAcc                                                                                                             >  1:951146/1‑140 (MQ=255)                       gCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCt                                                                                                           >  2:272269/1‑140 (MQ=255)                                 cATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgtc                                                                                                                  <  2:1076879/123‑1 (MQ=255)                                 cATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgtc                                                                                                                  >  1:1076879/1‑123 (MQ=255)                                 cATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATAcgccgc                                                                                                 >  2:1018492/1‑140 (MQ=255)                                 cATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑‑CCCCCCACGATATCCGTCGTACCCTGATACGCcgcg                                                                                                >  2:254213/1‑140 (MQ=255)                                     tCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGaa                                                                                             <  2:210190/140‑1 (MQ=255)                                         cTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgt                                                                                         >  2:1030571/1‑140 (MQ=255)                                             aGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATTGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttgtt                                                                                     <  2:943350/140‑1 (MQ=255)                                             aGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttgtt                                                                                     <  1:1030571/140‑1 (MQ=255)                                                 gtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCgg                                                                                               <  2:877303/126‑1 (MQ=255)                                                 gtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCgg                                                                                               >  1:877303/1‑126 (MQ=255)                                                 gtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAaga                                                                                 >  1:346203/1‑140 (MQ=255)                                                 gtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAaga                                                                                 >  1:656046/1‑140 (MQ=255)                                                 gtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAaga                                                                                 >  2:492309/1‑140 (MQ=255)                                                   gACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGt                                                                               >  2:235258/1‑140 (MQ=255)                                                   gACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGt                                                                               <  1:1018492/140‑1 (MQ=255)                                                   gACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGt                                                                               >  2:677480/1‑140 (MQ=255)                                                     cATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCa                                                                             >  1:414745/1‑140 (MQ=255)                                                      aTTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGCCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAg                                                                            <  2:951146/140‑1 (MQ=255)                                                         tCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGAt                                                                         >  1:493943/1‑140 (MQ=255)                                                              aCATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCgg                                                                    >  1:551890/1‑140 (MQ=255)                                                                aTCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑‑CCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAc                                                                 <  1:254213/140‑1 (MQ=255)                                                                  cacaCCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAcc                                                                >  2:364122/1‑140 (MQ=255)                                                                  cacaCCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAcc                                                                >  2:512782/1‑140 (MQ=255)                                                                        gCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGttt                                                          <  1:677480/140‑1 (MQ=255)                                                                        gCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGttt                                                          <  1:235258/140‑1 (MQ=255)                                                                            ttATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACTGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTc                                                      <  1:512782/140‑1 (MQ=255)                                                                                 gATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATc                                                 >  2:499153/1‑140 (MQ=255)                                                                                   tatTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCac                                               >  2:981650/1‑140 (MQ=255)                                                                                   tatTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCac                                               >  2:464900/1‑140 (MQ=255)                                                                                      tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgc                                            >  2:786980/1‑140 (MQ=255)                                                                                       aaTGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct                                           <  1:464900/140‑1 (MQ=255)                                                                                       aaTGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct                                           <  2:414745/140‑1 (MQ=255)                                                                                             ttGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGATGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctaccgct                                     >  2:69046/1‑140 (MQ=255)                                                                                              tGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTg                                    >  2:438460/1‑140 (MQ=255)                                                                                              tGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTg                                    >  2:531801/1‑140 (MQ=255)                                                                                                aCTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATAGGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGAt                                  >  2:174091/1‑140 (MQ=255)                                                                                                aCTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGAt                                  >  2:696770/1‑140 (MQ=255)                                                                                                aCTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGAt                                  >  2:622707/1‑140 (MQ=255)                                                                                                    gCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACtg                              >  1:322166/1‑140 (MQ=255)                                                                                                     ccATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACtgt                             >  1:378717/1‑140 (MQ=255)                                                                                                           tAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCa                       <  1:272269/140‑1 (MQ=255)                                                                                                           tAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCa                       <  2:346203/140‑1 (MQ=255)                                                                                                              tGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATAGGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCg                    <  1:174091/140‑1 (MQ=255)                                                                                                              tGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGATGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCg                    <  1:69046/140‑1 (MQ=255)                                                                                                               ggCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGc                   >  2:27546/1‑140 (MQ=255)                                                                                                                gCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGcc                  <  2:656046/140‑1 (MQ=255)                                                                                                                gCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTAATCGcc                  <  1:629749/140‑1 (MQ=255)                                                                                                                   gagTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAg               >  2:20830/1‑140 (MQ=255)                                                                                                                    agTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGc              >  1:1081355/1‑140 (MQ=255)                                                                                                                    agTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGc              >  2:456343/1‑140 (MQ=255)                                                                                                                    agTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGc              >  2:120501/1‑140 (MQ=255)                                                                                                                    agTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGc              >  1:155391/1‑140 (MQ=255)                                                                                                                     gTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCt             <  1:786980/140‑1 (MQ=255)                                                                                                                        ggAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACg          <  2:155391/140‑1 (MQ=255)                                                                                                                         gAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGc         <  1:718515/140‑1 (MQ=255)                                                                                                                           aCCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc       <  2:1081355/140‑1 (MQ=255)                                                                                                                           aCCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc       <  1:622707/140‑1 (MQ=255)                                                                                                                           aCCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTc       >  1:169310/1‑140 (MQ=255)                                                                                                                             cGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAg     <  1:438460/140‑1 (MQ=255)                                                                                                                               aaaGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTg   >  2:196638/1‑140 (MQ=255)                                                                                                                               aaaGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTg   <  1:364122/140‑1 (MQ=255)                                                                                                                                aaGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTgg  >  2:299863/1‑140 (MQ=255)                                                                                                                                aaGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTgg  <  1:981650/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                    CGACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTGG  >  NC_000913/1594113‑1594380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑