Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	564,993	A→G	V329A (GTC→GCC)	intD ←	DLP12 prophage; putative integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	564,993	0	A	G	100.0%	325.0 / NA	91	V329A (GTC→GCC)	intD	DLP12 prophage; putative integrase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (51/40);  total (51/40)

ATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGACGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAGGCGTTGA  >  NC_000913/564857‑565129                                                                                                                                         |                                                                                                                                         atTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGgcgc                                                                                                                                       <  2:893731/140‑1 (MQ=255) atTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGgcgc                                                                                                                                       <  1:309824/140‑1 (MQ=255) atTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGgcgc                                                                                                                                       >  2:292867/1‑140 (MQ=255)     gggACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGgcgc                                                                                                                                       >  1:642750/1‑136 (MQ=255)     gggACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGgcgc                                                                                                                                       <  2:642750/136‑1 (MQ=255)      ggACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCctgac                                                                                                                                  >  1:668118/1‑140 (MQ=255)      ggACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCctgac                                                                                                                                  >  2:270406/1‑140 (MQ=255)          aTTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGaa                                                                                                                              <  2:132951/140‑1 (MQ=255)            tATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATc                                                                                                                            >  2:92790/1‑140 (MQ=255)            tATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATc                                                                                                                            >  1:311494/1‑140 (MQ=255)            tATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATc                                                                                                                            >  2:109408/1‑140 (MQ=255)            tATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGACGCCTGACTGAATc                                                                                                                            >  2:1040319/1‑140 (MQ=255)              tCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATcag                                                                                                                          <  2:790293/140‑1 (MQ=255)                 ccAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATcagcca                                                                                                                       >  2:909310/1‑140 (MQ=255)                 ccAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATcagcca                                                                                                                       <  2:668118/140‑1 (MQ=255)                   aaaaaTGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATcagccagc                                                                                                                     <  1:355478/140‑1 (MQ=255)                   aaaaaTGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATcagccagc                                                                                                                     <  1:444377/140‑1 (MQ=255)                   aaaaaTGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATcagccagc                                                                                                                     <  1:92790/140‑1 (MQ=255)                   aaaaaTGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATcagccagc                                                                                                                     <  1:109408/140‑1 (MQ=255)                    aaaaTGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCt                                                                                                                    >  2:398114/1‑140 (MQ=255)                         gtcgtcTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGGAGCACTTATAATGGGGCGCCTGACTGAATCAGCCAGCTTGccc                                                                                                               <  1:1040319/140‑1 (MQ=255)                         gtcgtcTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGccc                                                                                                               <  1:342316/140‑1 (MQ=255)                          tcgtcTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCGTTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCa                                                                                                              >  1:787102/1‑140 (MQ=255)                            gtcTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAgg                                                                                                            <  1:360444/140‑1 (MQ=255)                            gtcTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAgg                                                                                                            <  1:398114/140‑1 (MQ=255)                            gtcTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACACCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAgg                                                                                                            <  2:612243/140‑1 (MQ=255)                             tcTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGgt                                                                                                           <  2:152951/140‑1 (MQ=255)                             tcTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGgt                                                                                                           <  1:495798/140‑1 (MQ=255)                               tATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAACTTGCCCAGgtgt                                                                                                         >  1:490234/1‑140 (MQ=255)                                   ttCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAACTTGCCCAGGTGTGTCt                                                                                                     <  2:490234/140‑1 (MQ=255)                                      cTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGccc                                                                                                               <  1:143924/127‑1 (MQ=255)                                      cTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGccc                                                                                                               >  2:143924/1‑127 (MQ=255)                                           aTGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGTCTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCAt                                                                                             >  2:64811/1‑140 (MQ=255)                                              ctctGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGTCTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGa                                                                                          <  1:64811/140‑1 (MQ=255)                                              ctctGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGa                                                                                          >  2:584996/1‑140 (MQ=255)                                                   tCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACgg                                                                                     <  1:584996/140‑1 (MQ=255)                                                    cAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGa                                                                                    <  1:909310/140‑1 (MQ=255)                                                     aaaTGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGaa                                                                                   >  2:831090/1‑140 (MQ=255)                                                        tGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACg                                                                                      <  1:433104/134‑1 (MQ=255)                                                        tGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACg                                                                                      >  2:433104/1‑134 (MQ=255)                                                         gATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCt                                                                               <  1:756303/140‑1 (MQ=255)                                                           ttAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTc                                                                             <  2:125777/140‑1 (MQ=255)                                                           ttAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTc                                                                             >  2:852763/1‑140 (MQ=255)                                                             gcgcctaaGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCaa                                                                           >  1:327668/7‑140 (MQ=255)                                                             aGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCaa                                                                           >  2:821494/1‑140 (MQ=255)                                                             aGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCaa                                                                           >  2:161183/1‑140 (MQ=255)                                                                     ggTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCa                                                                   <  1:292867/140‑1 (MQ=255)                                                                     ggTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCa                                                                   <  2:327668/140‑1 (MQ=255)                                                                     ggTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCa                                                                   >  2:598466/1‑140 (MQ=255)                                                                         aGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACTGAAATCTTCAATTCCTGCacg                                                                 <  2:769402/138‑1 (MQ=255)                                                                         aGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCacg                                                                 >  1:769402/1‑138 (MQ=255)                                                                           cATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCAcgacga                                                             <  2:463333/140‑1 (MQ=255)                                                                            aTACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACgacgac                                                            <  1:270406/140‑1 (MQ=255)                                                                            aTACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACgacgac                                                            <  1:821494/140‑1 (MQ=255)                                                                               ccTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAg                                                         >  1:962251/1‑140 (MQ=255)                                                                               ccTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAg                                                         >  1:879612/1‑140 (MQ=255)                                                                                cTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATAGAAACGGAAATCTTCAATTCCTGCACGACGACAAGc                                                        >  2:985308/1‑140 (MQ=255)                                                                                 tACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCt                                                       <  1:852763/140‑1 (MQ=255)                                                                                 tACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCt                                                       >  2:978389/1‑140 (MQ=255)                                                                                   cGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTTACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGa                                                     >  2:634334/1‑140 (MQ=255)                                                                                     aaCCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATa                                                   >  2:898984/1‑140 (MQ=255)                                                                                        cATTTCTATGGATTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGcc                                                >  2:482836/1‑140 (MQ=255)                                                                                         aTTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCa                                               <  1:798944/140‑1 (MQ=255)                                                                                          tttCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGGCGACAAGCTGATAGCCat                                              >  1:987166/1‑140 (MQ=255)                                                                                          tttCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCat                                              >  2:187096/1‑140 (MQ=255)                                                                                                tGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTc                                        >  1:856173/1‑140 (MQ=255)                                                                                                tGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTc                                        >  1:872074/1‑140 (MQ=255)                                                                                                tGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTc                                        >  2:677918/1‑140 (MQ=255)                                                                                                tGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTc                                        >  1:463291/1‑140 (MQ=255)                                                                                                     tCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCTCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCt                                   >  2:968721/1‑140 (MQ=255)                                                                                                     tCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCt                                   >  1:719784/1‑140 (MQ=255)                                                                                                     tCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCt                                   >  2:185017/1‑140 (MQ=255)                                                                                                       ccATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGt                                 >  2:1046053/1‑140 (MQ=255)                                                                                                       ccATCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGt                                 >  1:448932/1‑140 (MQ=255)                                                                                                          tCCGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGa                              >  2:907061/1‑140 (MQ=255)                                                                                                            cGCCCATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATg                            >  2:930251/1‑140 (MQ=255)                                                                                                              cccATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATgcg                          >  1:594311/1‑140 (MQ=255)                                                                                                              cccATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATgcg                          >  2:500620/1‑140 (MQ=255)                                                                                                               ccATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATgcgc                         <  1:968721/140‑1 (MQ=255)                                                                                                               ccATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGGGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATgcgc                         >  2:880246/1‑140 (MQ=255)                                                                                                                cATTTCCTGAAGCACTGATAATGGGGTGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCa                        <  2:962251/140‑1 (MQ=255)                                                                                                                cATTTCCTGAAGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCa                        <  2:879612/140‑1 (MQ=255)                                                                                                                         aaGCACTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGa               >  2:944424/1‑140 (MQ=255)                                                                                                                             aCTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGc           >  1:4626/1‑140 (MQ=255)                                                                                                                             aCTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGc           >  1:711322/1‑140 (MQ=255)                                                                                                                             aCTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGc           >  2:806369/1‑140 (MQ=255)                                                                                                                             aCTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGc           >  1:955426/1‑140 (MQ=255)                                                                                                                             aCTGATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGc           >  1:999950/1‑140 (MQ=255)                                                                                                                                gATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCATGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTg                <  1:414277/132‑1 (MQ=255)                                                                                                                                gATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTg                >  2:414277/1‑132 (MQ=255)                                                                                                                                gATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAgg        <  2:999950/140‑1 (MQ=255)                                                                                                                                gATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAgg        <  2:711322/140‑1 (MQ=255)                                                                                                                                gATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAgg        <  2:448932/140‑1 (MQ=255)                                                                                                                                gATAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAgg        <  1:880246/140‑1 (MQ=255)                                                                                                                                 aTAATGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAGGc       <  1:1046053/140‑1 (MQ=255)                                                                                                                                   aaTGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAGGCGt     <  1:185017/140‑1 (MQ=255)                                                                                                                                    aTGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAGGCGtt    >  2:193070/1‑140 (MQ=255)                                                                                                                                     tGGGGCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAGGCGTTg   <  2:463291/140‑1 (MQ=255)                                                                                                                                      ggggCGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAGGCGTTGa  <  1:783063/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                         ATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGACGCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAGGCGTTGA  >  NC_000913/564857‑565129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑