| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,502,847 | A→G | T131A (ACC→GCC) | ydcL → | DUF3313 domain‑containing lipoprotein YdcL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,502,847 | 0 | A | G | 96.2% | 184.7 / ‑0.1 | 53 | coding (391/669 nt) | ydcL | DUF3313 domain‑containing lipoprotein YdcL |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (22/29); minor base . (1/1); total (23/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAGAAAGTTCTGGATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATACCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTATTTTGAAGGTGAG > NC_000913/1502714‑1502963 | gCAGAAAGTTCTGGATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCa > 1:721463/1‑140 (MQ=255) aaaGTTCTGGATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAg > 1:459509/1‑134 (MQ=255) aaaGTTCTGGATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAg < 2:459509/134‑1 (MQ=255) aaaGTTCTGGATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAaaga > 1:875884/1‑140 (MQ=255) tGGATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTg > 1:175748/1‑140 (MQ=255) tGGATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTg < 2:308079/140‑1 (MQ=255) tGGATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGAT‑GCAGCAAAGAAGGGCTGc > 2:434709/1‑140 (MQ=255) gATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCa < 2:1052054/140‑1 (MQ=255) gATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCa < 2:721463/140‑1 (MQ=255) tttGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATg < 1:108363/140‑1 (MQ=255) gAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAg < 2:750701/140‑1 (MQ=255) tataCCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTACGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGt < 1:409029/140‑1 (MQ=255) ataCCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGtt < 2:875884/140‑1 (MQ=255) taCCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTc > 2:317691/1‑140 (MQ=255) cacCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTg > 2:682692/1‑140 (MQ=255) ccGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCGGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCa < 2:174787/140‑1 (MQ=255) ccGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCa > 1:324346/1‑140 (MQ=255) gAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCACTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCAtt > 2:172712/1‑140 (MQ=255) aaaTGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCAGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTa > 1:222447/1‑140 (MQ=255) aagaagCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGtt > 1:458683/1‑140 (MQ=255) agCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCgg > 1:499787/1‑140 (MQ=255) gCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCAtt < 1:952041/128‑1 (MQ=255) gCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCAtt > 2:952041/1‑128 (MQ=255) tAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACg > 2:884762/1‑140 (MQ=255) tAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACg < 2:220163/140‑1 (MQ=255) aGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATg > 2:459699/1‑140 (MQ=255) aaCCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACa < 1:156808/140‑1 (MQ=255) ccACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGAT‑GCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGc < 1:434709/140‑1 (MQ=255) tGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCAc > 1:175386/1‑140 (MQ=255) tGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCAc < 2:175386/140‑1 (MQ=255) ggTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCAcc < 1:459699/140‑1 (MQ=255) gTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCg < 2:324346/140‑1 (MQ=255) ttACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGt < 1:172712/140‑1 (MQ=255) caccGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCAc < 2:276901/133‑1 (MQ=255) caccGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCAc > 1:276901/1‑133 (MQ=255) cGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATgg < 2:154980/140‑1 (MQ=255) cTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCa > 1:851712/1‑127 (MQ=255) cTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCa < 2:851712/127‑1 (MQ=255) tGGGCAGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATa < 2:222447/140‑1 (MQ=255) ggCTGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACt < 1:682692/140‑1 (MQ=255) gCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTc > 1:289738/1‑140 (MQ=255) ccGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCg < 2:175748/140‑1 (MQ=255) cgTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCct < 1:317691/140‑1 (MQ=255) tGATTTTCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTAtttt > 2:801586/1‑140 (MQ=255) tttCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTATTTTGAAg < 1:801586/140‑1 (MQ=255) tttCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTATTTTGAAg > 2:788300/1‑140 (MQ=255) ttCCGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTATTTTGAAgg < 2:289738/140‑1 (MQ=255) cGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTAttt > 1:318675/1‑131 (MQ=255) cGTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTAttt < 2:318675/131‑1 (MQ=255) gTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTATTTTGAAGGTGAg < 2:499787/140‑1 (MQ=255) gTGGGGCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTATTTTGAAGGTGAg < 2:234466/140‑1 (MQ=255) gggCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTATTTTGAAg < 2:49626/132‑1 (MQ=255) gggCCATTACCGGTGTAGATGCCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTATTTTGAAg > 1:49626/1‑132 (MQ=255) | GCAGAAAGTTCTGGATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCAGCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATACCAGCAAAGAAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATGGATACTCGCCTCTATTTTGAAGGTGAG > NC_000913/1502714‑1502963 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |