Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,473,862 | T→C | Y87H (TAT→CAT) | yfdP → | CPS‑53 (KpLE1) prophage; protein YfdP |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,473,862 | 0 | T | C | 98.0% | 176.5 / ‑5.8 | 50 | Y87H (TAT→CAT) | yfdP | CPS‑53 (KpLE1) prophage; protein YfdP |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (21/28); minor base A (1/0); total (22/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.40e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGCAGCAGGTCATTAATATCATTCTTAATTAACTAATTATTTATCTCA > NC_000913/2473727‑2473998 | aaaGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGatgcat > 2:406377/1‑138 (MQ=255) aaggtCTCACTCAACCTGGAAATCGAACCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATcg < 2:909223/140‑1 (MQ=255) cactcaACCTGGAAATCGAACCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCggtggt < 1:678635/140‑1 (MQ=255) cactcaACCTGGAAATCGAACCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCggtggt < 1:319208/140‑1 (MQ=255) ctcaACCTGGAAATCGAACCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCg < 1:574692/140‑1 (MQ=255) tGGAAATCGAACCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACt < 2:608287/140‑1 (MQ=255) aaCCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCggtggt < 1:145621/122‑1 (MQ=255) aaCCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCggtggt > 2:145621/1‑122 (MQ=255) aaCCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAg > 2:915685/1‑140 (MQ=255) aCCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAgg < 2:535630/140‑1 (MQ=255) aCCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAgg < 1:915685/140‑1 (MQ=255) aCCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAgg < 1:1078356/140‑1 (MQ=255) aCCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAgg < 1:1057113/140‑1 (MQ=255) tgatgaGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGAcc > 1:943761/1‑140 (MQ=255) gaACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGAc > 1:14556/1‑140 (MQ=255) aCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGa > 2:98162/1‑127 (MQ=255) aCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGa < 1:98162/127‑1 (MQ=255) ccGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAAt > 1:1030209/1‑140 (MQ=255) tCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTTAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTAc > 1:588295/1‑140 (MQ=255) tCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTAc > 2:822756/1‑140 (MQ=255) tCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTAc > 2:774549/1‑140 (MQ=255) aaaaTCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGAc < 1:774549/140‑1 (MQ=255) tCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCtt > 1:817428/1‑140 (MQ=255) acacAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGAc < 1:106325/132‑1 (MQ=255) acacAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGAc > 2:106325/1‑132 (MQ=255) acaAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGAATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGt > 2:755666/1‑140 (MQ=255) aaaCTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGa > 2:892531/1‑140 (MQ=255) aCTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGc > 2:883964/1‑140 (MQ=255) aCTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGc > 2:575209/1‑140 (MQ=255) ctctCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGcc > 1:182842/1‑140 (MQ=255) ctcATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTTAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTg < 2:588295/140‑1 (MQ=255) ctcATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTg < 2:766663/140‑1 (MQ=255) gCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTc > 2:875728/1‑140 (MQ=255) gCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTc > 1:32820/1‑140 (MQ=255) ccGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCcg < 2:32820/140‑1 (MQ=255) aCTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTg > 1:780453/1‑124 (MQ=255) aCTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTg < 2:780453/124‑1 (MQ=255) aCTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCcg > 1:130729/1‑137 (MQ=255) aCTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCcg < 2:130729/137‑1 (MQ=255) ccGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGcagcag < 1:892531/140‑1 (MQ=255) ccGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGcagcag < 1:875728/140‑1 (MQ=255) ccGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGcagcag < 2:943761/140‑1 (MQ=255) ggAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGCAGCAGGTCAt < 2:908064/140‑1 (MQ=255) gAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGcagcag > 2:188955/1‑134 (MQ=255) gAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGcagcag < 1:188955/134‑1 (MQ=255) acacCACCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGCAGCAGGTCATTAATATCATTCttaatta < 1:532702/140‑1 (MQ=255) caccacCGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGCAGCAGGTCATTAATATCATTCttaattaa < 2:798221/140‑1 (MQ=255) ccaccGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGCAGCAGGTCATTAATATCATTCTTAATTAACt < 2:817428/140‑1 (MQ=255) ccaccGAAACGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGCAGCAGGTCATTAATATCATTCTTAATTAACt < 2:862294/140‑1 (MQ=255) cGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGCAGCAGGTCATTAATATCATTCtta < 2:221082/124‑1 (MQ=255) cGCCGATGCATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGCAGCAGGTCATTAATATCATTCtta > 1:221082/1‑124 (MQ=255) atgcatgtCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGCAGCAGGTCATTAATATCATTCTTAATTAACt < 1:994302/126‑1 (MQ=255) atgcatgtCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGCAGCAGGTCATTAATATCATTCTTAATTAACTAATTATTTATCtca < 1:653200/140‑1 (MQ=255) | AAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGGGACAATTACTGACTCTTGCCGGTGAGCCTGACGGAAAACTCCGCGCAGCAGGTCATTAATATCATTCTTAATTAACTAATTATTTATCTCA > NC_000913/2473727‑2473998 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |