mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 23 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 99,632 | 0 | A | G | 61.4% | 41.9 / 60.2 | 57 | V410V (GTA→GTG) | ftsW | putative lipid II flippase FtsW |
| * | NC_000913 | 2,036,131 | 0 | T | C | 60.6% | 19.1 / 33.3 | 33 | G99G (GGT→GGC) | hchA | protein/nucleic acid deglycase 1 |
| * | NC_000913 | 2,496,080 | 0 | T | C | 57.9% | 18.0 / 41.5 | 38 | C146R (TGC→CGC) | lpxP | palmitoleoyl acyltransferase |
| * | NC_000913 | 1,898,100 | 0 | T | C | 57.1% | 25.7 / 73.0 | 63 | V390A (GTG→GCG) | sdaA | L‑serine deaminase I |
| * | NC_000913 | 3,575,461 | 0 | T | C | 56.1% | 15.0 / 69.4 | 57 | Y131H (TAC→CAC) | yhgN | putative inner membrane protein |
| * | NC_000913 | 4,464,540 | 0 | A | G | 55.7% | 23.6 / 98.1 | 79 | V57A (GTC→GCC) | treC | trehalose‑6‑phosphate hydrolase |
| * | NC_000913 | 3,546,408 | 0 | T | C | 54.8% | 20.7 / 93.8 | 73 | intergenic (+209/‑151) | nfuA/gntT | iron‑sulfur cluster carrier protein NfuA/high‑affinity gluconate transporter |
| * | NC_000913 | 3,213,470 | 0 | A | G | 50.0% | ‑2.6 / 77.6 | 56 | T142A (ACC→GCC) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| * | NC_000913 | 3,052,995 | 0 | T | C | 44.4% | 11.1 / 56.0 | 45 | D175G (GAC→GGC) | ubiH | 2‑octaprenyl‑6‑methoxyphenol hydroxylase |
| * | NC_000913 | 2,152,970 | 0 | A | G | 42.5% | 17.9 / 55.9 | 47 | A53A (GCT→GCC) | yegL | IPR002035 domain‑containing protein YegL |
| * | NC_000913 | 921,822 | 0 | A | G | 41.5% | 29.4 / 75.5 | 65 | L492L (TTA→TTG) | macB | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| * | NC_000913 | 3,240,998 | 0 | T | C | 39.3% | 9.3 / 28.5 | 28 | I352T (ATC→ACC) | sstT | serine/threonine:Na(+) symporter |
| * | NC_000913 | 4,604,344 | 0 | C | T | 36.8% | 60.7 / 30.8 | 57 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,001,918 | 0 | A | C | 36.1% | 51.2 / 13.0 | 36 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 4,111,747 | 0 | G | T | 35.7% | 53.9 / 11.4 | 28 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 1,254,154 | 0 | C | . | 31.6% | 132.6 / 62.2 | 57 | coding (1799/2868 nt) | ycgV | putative autotransporter adhesin YcgV |
| * | NC_000913 | 4,287,719 | 0 | T | A | 29.1% | 100.7 / 26.8 | 55 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase |
| * | NC_000913 | 3,275,611 | 0 | A | C | 28.3% | 82.3 / 10.9 | 46 | E110D (GAA→GAC) | garD | galactarate dehydratase |
| * | NC_000913 | 3,926,366 | 0 | A | C | 25.4% | 139.9 / 11.7 | 67 | G30G (GGT→GGG) | mioC | flavoprotein MioC |
| * | NC_000913 | 4,296,060 | 0 | C | T | 24.6% | 114.4 / 34.8 | 61 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 374922 = | NA (NA) | 7 (0.120) | 6/258 | 4.1 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377329 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 374963 | NA (NA) | 3 (0.070) | 3/188 | 4.3 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 340035 = | NA (NA) | 4 (0.070) | 3/272 | 5.5 | NA | coding (243/297 nt) | yahH | putative uncharacterized protein YahH |
| ? | NC_000913 | 377322 = | NA (NA) | intergenic (+11/+213) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 339849 = | NA (NA) | 3 (0.050) | 3/272 | 5.5 | NA | coding (57/297 nt) | yahH | putative uncharacterized protein YahH |
| ? | NC_000913 | 377322 = | NA (NA) | intergenic (+11/+213) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 339756 = | NA (NA) | 3 (0.050) | 3/272 | 5.5 | NA | intergenic (+13/‑37) | yahG/yahH | DUF1116 domain‑containing protein YahG/putative uncharacterized protein YahH |
| ? | NC_000913 | 377322 = | NA (NA) | intergenic (+11/+213) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||