Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,012,563	(G)6→7	pseudogene (62/279 nt)	intG →	putative defective phage integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,012,557	1	.	G	100.0%	226.0 / NA	62	pseudogene (56/279 nt)	intG	putative defective phage integrase
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (29/33);  total (29/33)

TCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAA  >  NC_000913/2012418‑2012686                                                                                                                                             |                                                                                                                                  tCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCa                                                                                                                                    >  2:582409/1‑140 (MQ=255)   aaaaaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTCACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gg                                                                                                                                 <  2:380261/140‑1 (MQ=255)         cGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gggggggt                                                                                                                           >  1:812890/1‑138 (MQ=255)           cTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gggggggtta                                                                                                                         >  1:114576/1‑136 (MQ=255)            tCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gggggggttat                                                                                                                        <  2:129010/140‑6 (MQ=255)             cATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCTGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATc                                                                                                                        <  1:326631/140‑1 (MQ=255)              atatCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATcg                                                                                                                       <  1:473964/140‑1 (MQ=255)              atatCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATcg                                                                                                                       <  1:299167/140‑1 (MQ=255)                    aTCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGtata                                                                                                                 <  2:3215/140‑1 (MQ=255)                    aTCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGtata                                                                                                                 <  1:409425/140‑1 (MQ=255)                      cGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gggg                                                                                                                               <  1:161023/123‑1 (MQ=255)                      cGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gggg                                                                                                                               >  2:161023/1‑123 (MQ=255)                        cccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTATGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGa                                                                                                             >  2:597833/1‑140 (MQ=255)                         ccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGAt                                                                                                            >  2:519437/1‑140 (MQ=255)                          cGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATc                                                                                                           <  2:288926/140‑1 (MQ=255)                          cGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATc                                                                                                           >  1:451565/1‑140 (MQ=255)                              atatGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTgg                                                                                                       <  2:114576/140‑1 (MQ=255)                                  gAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATgg                                                                                                   >  2:360303/1‑140 (MQ=255)                                       aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGaa                                                                                              >  1:396554/1‑140 (MQ=255)                                       aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGaa                                                                                              >  1:319759/1‑140 (MQ=255)                                       aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGAGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGAGGATGGCAGaa                                                                                              >  2:615766/1‑140 (MQ=255)                                           cATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACg                                                                                          <  2:319759/140‑1 (MQ=255)                                             tCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGtt                                                                                        >  1:645415/1‑140 (MQ=255)                                             tCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGtt                                                                                        >  2:717796/1‑140 (MQ=255)                                                acaaAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAg                                                                                     >  1:614533/1‑140 (MQ=255)                                                 caaAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAgg                                                                                    <  2:396554/140‑1 (MQ=255)                                                   aaGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGTAGAAAACGTTCAGGAt                                                                                  <  2:541808/140‑1 (MQ=255)                                                   aaGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGAt                                                                                  <  1:717796/140‑1 (MQ=255)                                                   aaGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGAt                                                                                  <  1:519437/140‑1 (MQ=255)                                                                    agGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTaaa                                                                 >  2:633993/1‑140 (MQ=255)                                                                    agGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGCATCCATTTTaaa                                                                 >  2:233718/1‑140 (MQ=255)                                                                         aCTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGa                                                            >  1:329868/1‑140 (MQ=255)                                                                           tGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGaaa                                                          <  1:582409/140‑1 (MQ=255)                                                                           tGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGaaa                                                          <  2:812890/140‑1 (MQ=255)                                                                                cGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgag                                                     >  1:320738/1‑140 (MQ=255)                                                                                  tCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgagtg                                                   >  2:61627/1‑140 (MQ=255)                                                                                  tCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgag                                                     >  2:407968/1‑138 (MQ=255)                                                                                  tCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgag                                                     <  1:407968/138‑1 (MQ=255)                                                                                     gtgGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTgagtgagt                                                <  2:358107/140‑1 (MQ=255)                                                                                         tCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGc                                            >  1:752884/1‑140 (MQ=255)                                                                                           gTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGccc                                          <  1:633993/140‑1 (MQ=255)                                                                                           gTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGCATCCATTTTAAACCAGAAATTGAGTGAGTTTGccc                                          <  1:233718/140‑1 (MQ=255)                                                                                            tAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTgagtgagt                                                >  2:415657/1‑133 (MQ=255)                                                                                            tAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTgagtgagt                                                <  1:415657/133‑1 (MQ=255)                                                                                              acaacaTCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCccat                                       <  2:645415/140‑1 (MQ=255)                                                                                                aacaTCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCccatcc                                     <  2:451565/140‑1 (MQ=255)                                                                                                   aTCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATg                                  >  2:206527/1‑140 (MQ=255)                                                                                                   aTCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATg                                  >  2:265341/1‑140 (MQ=255)                                                                                                     ccGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGcc                                           <  1:764533/129‑1 (MQ=255)                                                                                                     ccGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTACAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGcc                                           >  2:764533/1‑129 (MQ=255)                                                                                                        aCGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCa                             <  1:62984/140‑1 (MQ=255)                                                                                                            ggtgATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCAcgcg                         >  1:660983/1‑140 (MQ=255)                                                                                                              tgATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGt                       <  1:360303/140‑1 (MQ=255)                                                                                                               gATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTg                      <  1:206527/140‑1 (MQ=255)                                                                                                                  gtgtCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTgaga                   <  1:61627/140‑1 (MQ=255)                                                                                                                   tgtCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGAt                  <  1:265341/140‑1 (MQ=255)                                                                                                                     tCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCg                >  2:517306/1‑140 (MQ=255)                                                                                                                      cAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCgg               <  2:752884/140‑1 (MQ=255)                                                                                                                        aaTGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGAt             >  1:422692/1‑140 (MQ=255)                                                                                                                           gagaCGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTa          <  1:134146/140‑1 (MQ=255)                                                                                                                            agaCGCTCCGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGAt                  <  1:177192/131‑1 (MQ=255)                                                                                                                            agaCGCTCCGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGAt                  >  2:177192/1‑131 (MQ=255)                                                                                                                             gaCGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAAt        <  2:614533/140‑1 (MQ=255)                                                                                                                               cGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAAtt       <  1:310219/139‑1 (MQ=255)                                                                                                                               cGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAAtt       >  2:310219/1‑139 (MQ=255)                                                                                                                               cGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTa      >  1:428925/1‑140 (MQ=255)                                                                                                                               cGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTa      >  2:363756/1‑140 (MQ=255)                                                                                                                                gCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTaa     <  1:615766/140‑1 (MQ=255)                                                                                                                                   ctGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTaacaa  >  1:3382/1‑140 (MQ=255)                                                                                                                                             |                                                                                                                                  TCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAA  >  NC_000913/2012418‑2012686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑