Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,552,123 | T→C | G117G (GGA→GGG) | malP ← | maltodextrin phosphorylase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,552,123 | 0 | T | C | 98.0% | 177.4 / ‑5.7 | 51 | G117G (GGA→GGG) | malP | maltodextrin phosphorylase |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (22/28); minor base A (0/1); total (22/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCAGTCATCCGGCGCTTCAACCTGTTTGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTT > NC_000913/3551988‑3552245 | ccAGTCATCCGGCGCTTCAACCTGTTTGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCa > 1:132006/1‑140 (MQ=255) gTCATCCGGCGCTTCAACCTGTTTGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGac < 1:555459/140‑1 (MQ=255) gTCATCCGGCGCTTCAACCTGTTTGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGac < 2:776679/140‑1 (MQ=255) gTCATCCGGCGCTTCAACCTGTTTGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGac < 2:557937/140‑1 (MQ=255) gTCATCCGGCGCTTCAACCTGTTTGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGac < 1:613485/140‑1 (MQ=255) gTCATCCGGCGCTTCAACCTGTTTGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGac < 1:458802/140‑1 (MQ=255) gTCATCCGGCGCTTCAACCTGTTTGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGac < 1:456763/140‑1 (MQ=255) gTCATCCGGCGCTTCAACCTGTTTGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGac < 2:309086/140‑1 (MQ=255) cTTCAACCTGTTTGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTAccc > 2:317427/1‑140 (MQ=255) tGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCg < 2:738079/140‑1 (MQ=255) gCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGa < 2:671130/140‑1 (MQ=255) aCAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCtcttc > 2:96506/1‑140 (MQ=255) aaGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTcc < 1:123807/140‑1 (MQ=255) gCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCca > 2:277217/1‑134 (MQ=255) gCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCca < 1:277217/134‑1 (MQ=255) aCCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGAt > 2:378194/1‑140 (MQ=255) atatTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGa < 2:465027/140‑1 (MQ=255) tAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGt < 2:125078/125‑1 (MQ=255) tAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGt > 1:125078/1‑125 (MQ=255) tAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATa > 1:301771/1‑140 (MQ=255) gTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAg > 1:853862/1‑140 (MQ=255) tCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGcc > 1:800315/1‑140 (MQ=255) cAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCt > 1:470329/1‑140 (MQ=255) cAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCt > 2:277803/1‑140 (MQ=255) aCCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCa > 2:167725/1‑140 (MQ=255) ccGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCaa > 1:126935/1‑140 (MQ=255) cGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAAc < 2:380333/140‑1 (MQ=255) tAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGa > 1:656393/1‑140 (MQ=255) aCCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAAt < 1:317427/140‑1 (MQ=255) cGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTa < 2:853862/140‑1 (MQ=255) cGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTa < 1:167725/140‑1 (MQ=255) cGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTa > 2:659060/1‑140 (MQ=255) cGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTa < 2:132006/140‑1 (MQ=255) cGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTa < 1:96506/140‑1 (MQ=255) gCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTAc < 2:656393/140‑1 (MQ=255) gCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTAc < 1:277803/140‑1 (MQ=255) gACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGCCCACCGTTACCCAGAGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGa < 2:233222/140‑1 (MQ=255) atcGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGACCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGAt < 2:800315/138‑1 (MQ=255) aGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGc > 2:389551/1‑140 (MQ=255) gCCATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCgag > 2:238612/1‑140 (MQ=255) ccATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTCCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCgaga < 2:601324/140‑1 (MQ=255) cATTGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGAt < 1:659060/140‑1 (MQ=255) tGAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCa > 1:387190/1‑140 (MQ=255) gAGTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCaa < 2:470329/140‑1 (MQ=255) gTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCGGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACa < 1:356128/140‑1 (MQ=255) gTCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACa > 2:142963/1‑140 (MQ=255) tCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAAc > 2:244487/1‑138 (MQ=255) tCGAGGAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAAc < 1:244487/138‑1 (MQ=255) gAAGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGgttgt < 1:389551/140‑1 (MQ=255) aaGCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGgttgtt > 1:256437/1‑140 (MQ=255) gCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGgttgt > 2:24224/1‑137 (MQ=255) gCACGCCGCCAGACGCCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGgttgt < 1:24224/137‑1 (MQ=255) | CCAGTCATCCGGCGCTTCAACCTGTTTGCCATCGACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTT > NC_000913/3551988‑3552245 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |