Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,597,119	T→C	pseudogene (968/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,597,119	0	T	C	100.0%	282.4 / NA	77	pseudogene (968/5422 nt)	yneO	AIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (35/42);  total (35/42)

ACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGT  >  NC_000913/1596987‑1597255                                                                                                                                     |                                                                                                                                         aCTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAAc                                                                                                                                   >  1:413512/1‑140 (MQ=255)    ttGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCAGCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGcc                                                                                                                                <  2:806690/140‑1 (MQ=255)         ttCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCccacca                                                                                                                           >  2:484292/1‑140 (MQ=255)                 agaCATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGcc                                                                                                                                >  1:141948/1‑127 (MQ=255)                 agaCATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGcc                                                                                                                                <  2:141948/127‑1 (MQ=255)                       tAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTg                                                                                                             >  1:640525/1‑140 (MQ=255)                       tAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTg                                                                                                             >  2:688671/1‑140 (MQ=255)                        aaGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGt                                                                                                            >  1:744071/1‑140 (MQ=255)                             cACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCtt                                                                                                               >  1:19159/1‑132 (MQ=255)                             cACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCtt                                                                                                               <  2:19159/132‑1 (MQ=255)                             cACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGttatta                                                                                                       >  1:819550/1‑140 (MQ=255)                              aCCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTaa                                                                                                      <  2:521438/140‑1 (MQ=255)                               ccGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAAt                                                                                                     <  1:244953/140‑1 (MQ=255)                               ccGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAAt                                                                                                     <  2:97131/140‑1 (MQ=255)                                cGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATc                                                                                                    >  1:794881/1‑140 (MQ=255)                                cGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATc                                                                                                    >  1:794800/1‑140 (MQ=255)                                   cGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGt                                                                                                 >  1:441879/1‑140 (MQ=255)                                   cGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGt                                                                                                 >  1:670510/1‑140 (MQ=255)                                    gCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTc                                                                                                <  2:794800/140‑1 (MQ=255)                                    gCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTc                                                                                                <  2:215797/140‑1 (MQ=255)                                            cACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCa                                                                                              >  2:115885/1‑134 (MQ=255)                                            cACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCa                                                                                              <  1:115885/134‑1 (MQ=255)                                             aCCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTgg                                                                                       >  1:764556/1‑140 (MQ=255)                                             aCCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTgg                                                                                       <  1:776992/140‑1 (MQ=255)                                                  tatagatatagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAata                                                                                  <  2:413512/140‑1 (MQ=255)                                                   atagatatagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTg                                                                                        <  1:18816/133‑1 (MQ=255)                                                   atagatatagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTg                                                                                        >  2:18816/1‑133 (MQ=255)                                                       atatagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGAc                                                                             >  2:174348/1‑140 (MQ=255)                                                       atatagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGAc                                                                             >  2:20614/1‑140 (MQ=255)                                                        tatagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACt                                                                            <  1:20614/140‑1 (MQ=255)                                                        tatagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACt                                                                            <  1:174348/140‑1 (MQ=255)                                                         atagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACtg                                                                           >  2:17012/1‑140 (MQ=255)                                                         atagCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACtg                                                                           >  2:117864/1‑140 (MQ=255)                                                            gCGGACAGCTTCGCCCGTTCCGAGGACATTCCTATGCCCTCTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTTTTATTAATCAGTCCATTATTGGAAATATTGACTGTGc                                                                        <  2:764556/140‑1 (MQ=255)                                                            gCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGc                                                                        >  2:509221/1‑140 (MQ=255)                                                            gCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGc                                                                        >  2:244575/1‑140 (MQ=255)                                                            gCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGc                                                                        <  1:688671/140‑1 (MQ=255)                                                            gCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGc                                                                        >  2:289952/1‑140 (MQ=255)                                                             cGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGcc                                                                       >  2:14454/1‑140 (MQ=255)                                                             cGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGcc                                                                       >  1:185258/1‑140 (MQ=255)                                                             cGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGcc                                                                       >  2:528793/1‑140 (MQ=255)                                                              ggAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCa                                                                      <  2:609659/140‑1 (MQ=255)                                                               gAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCAt                                                                     >  1:633608/1‑140 (MQ=255)                                                               gAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCAt                                                                     >  1:332827/1‑140 (MQ=255)                                                                aaaGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGa                                                                              >  2:774001/1‑130 (MQ=255)                                                                aaaGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGa                                                                              <  1:774001/130‑1 (MQ=255)                                                                aaaGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCAtt                                                                    <  2:292531/140‑1 (MQ=255)                                                                 aaGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTa                                                                   >  2:705708/1‑140 (MQ=255)                                                                    cTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCg                                                                >  2:826279/1‑140 (MQ=255)                                                                     ttCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGa                                                               >  2:405816/1‑140 (MQ=255)                                                                     ttCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGCTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGa                                                               >  1:651947/1‑140 (MQ=255)                                                                      tCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGaa                                                              <  2:633608/140‑1 (MQ=255)                                                                      tCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGaa                                                              <  1:117864/140‑1 (MQ=255)                                                                      tCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGaa                                                              <  1:405816/140‑1 (MQ=255)                                                                        gCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAat                                                            <  2:332827/140‑1 (MQ=255)                                                                        gCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAat                                                            <  1:17012/140‑1 (MQ=255)                                                                          ccGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAatat                                                          <  2:185258/140‑1 (MQ=255)                                                                          ccGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAatat                                                          <  2:819550/140‑1 (MQ=255)                                                                          ccGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAatat                                                          <  1:244575/140‑1 (MQ=255)                                                                          ccGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAatat                                                          <  2:640525/140‑1 (MQ=255)                                                                            gTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATcc                                                        >  2:54006/1‑140 (MQ=255)                                                                             ttCCGAGGAAATTCCAATGCCCTTTATCGGTTACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCa                                                       <  2:670510/140‑1 (MQ=255)                                                                             ttCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTGCCGAAATATCCa                                                       <  2:441879/140‑1 (MQ=255)                                                                                 gAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATtat                                                   <  2:14676/140‑1 (MQ=255)                                                                                 gAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATtat                                                   <  2:744071/140‑1 (MQ=255)                                                                                       aTTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATagag                                               >  2:595720/1‑138 (MQ=255)                                                                                       aTTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATagag                                               <  1:595720/138‑1 (MQ=255)                                                                                              tGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTAc                                      <  1:14454/140‑1 (MQ=255)                                                                                              tGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTAc                                      <  1:289952/140‑1 (MQ=255)                                                                                                       tCGGTCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGAc                             <  2:794881/140‑1 (MQ=255)                                                                                                           tCACGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACagag                         <  1:54006/140‑1 (MQ=255)                                                                                                              cGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCt                      <  2:651947/140‑1 (MQ=255)                                                                                                              cGTTGACGACACCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCt                      <  2:356775/140‑1 (MQ=255)                                                                                                                       cacCGTGGGAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGc             <  1:528793/140‑1 (MQ=255)                                                                                                                               gAACCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAg     <  1:617091/140‑1 (MQ=255)                                                                                                                                 aCCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTc       >  1:290490/1‑136 (MQ=255)                                                                                                                                 aCCGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTc       <  2:290490/136‑1 (MQ=255)                                                                                                                                  ccGCCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGt  <  1:509221/140‑1 (MQ=255)                                                                                                                                     |                                                                                                                                         ACTTTGCCTTCACTCGAGACATTAAGTTCACCGTCGCCAGCATCACCGATATAGATATAGCGGAAAGCTTCGCCCGTTCCGAGGAAATTCCAATGCCCTTTATCGGTCACGTTGACGACACCGTGGGAACCGTCCTGAACGCCCACCAATGAATATTCTTTGTTATTAATCAGTCCATTATTGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGT  >  NC_000913/1596987‑1597255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑