mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,206,435 | 0 | C | T | 42.9% | 10.4 / 14.7 | 21 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 4,604,344 | 0 | C | T | 40.0% | 26.5 / 16.3 | 30 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 753,125 | 0 | T | A | 34.2% | 66.0 / 17.2 | 38 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 2,001,918 | 0 | A | C | 29.3% | 74.6 / 11.9 | 41 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 3,740,909 | 0 | T | G | 28.2% | 70.7 / 11.9 | 39 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate aminotransferase |
| * | NC_000913 | 332,991 | 0 | G | T | 27.3% | 81.5 / 11.9 | 33 | L207F (TTG→TTT) | pdeL | DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| * | NC_000913 | 4,287,719 | 0 | T | A | 22.7% | 98.9 / 14.8 | 44 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase |
| * | NC_000913 | 1,978,405 | 0 | G | A | 21.4% | 87.5 / 17.9 | 42 | intergenic (‑208/+113) | flhD/insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 374922 = | NA (NA) | 4 (0.110) | 3/202 | 4.1 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | NA (NA) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 3531952 | 52 (1.020) | 4 (0.080) | 3/270 | 5.0 | 7.6% | coding (488/1725 nt) | yhgE | putative transport protein YhgE |
| ? | NC_000913 | 3531958 = | 47 (0.950) | coding (482/1725 nt) | yhgE | putative transport protein YhgE | |||||
| * | ? | NC_000913 | = 274752 | NA (NA) | 3 (0.060) | 3/272 | 5.0 | NA | noncoding (398/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274756 = | NA (NA) | noncoding (394/1195 nt) | IS5 | repeat region | |||||