Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,211,417	T→C	pseudogene (5/165 nt)	icdC →	protein IcdC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,211,417	0	T	C	98.8%	309.1 / ‑5.8	83	pseudogene (5/165 nt)	icdC	protein IcdC
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (54/28);  total (55/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AATGGTTATCAAAACTCAAAAACACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGT  >  NC_000913/1211281‑1211553                                                                                                                                         |                                                                                                                                         aaTGGTTATCAAAACTCAAAAACACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCcgcg                                                                                                                                       <  1:1082682/140‑1 (MQ=255) aaTGGTTATCAAAACTCAAAAACACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCcgcg                                                                                                                                       <  2:884681/140‑1 (MQ=255)       tATCAAAACTCAAAAACACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCatat                                                                                                                                 >  2:895289/1‑140 (MQ=255)          cAAAACTCAAAAACACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATggg                                                                                                                              <  1:1093619/140‑1 (MQ=255)          cAAAACTCAAAAACACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATggg                                                                                                                              <  1:952109/140‑1 (MQ=255)          cAAAACTCAAAAACACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATggg                                                                                                                              <  1:528067/140‑1 (MQ=255)           aaaaCTCAAAAACACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGt                                                                                                                             <  1:398820/140‑1 (MQ=255)             aaCTCAAAAACACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTg                                                                                                                           <  1:919881/140‑1 (MQ=255)                  aaaaaCACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTg                                                                                                                      >  2:495677/1‑140 (MQ=255)                  aaaaaCACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTg                                                                                                                      >  2:772437/1‑140 (MQ=255)                          aTGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCt                                                                                                              <  2:1327521/140‑1 (MQ=255)                             tttATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGAc                                                                                                           <  2:362375/140‑1 (MQ=255)                                  aaTCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGAt                                                                                                      >  2:962330/1‑140 (MQ=255)                                    tCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTg                                                                                                    >  1:661827/1‑140 (MQ=255)                                      aaTGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGtt                                                                                                  <  1:1203933/140‑1 (MQ=255)                                      aaTGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGtt                                                                                                  >  1:122514/1‑140 (MQ=255)                                       aTGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTa                                                                                                 <  2:1070329/140‑1 (MQ=255)                                       aTGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTa                                                                                                 <  2:1039896/140‑1 (MQ=255)                                       aTGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTa                                                                                                 <  1:1581508/140‑1 (MQ=255)                                        tGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTaa                                                                                                >  1:1393479/1‑140 (MQ=255)                                        tGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTaa                                                                                                >  1:708887/1‑140 (MQ=255)                                        tGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTaa                                                                                                >  1:307919/1‑140 (MQ=255)                                             tataGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTa                                                                                           >  2:342871/1‑140 (MQ=255)                                              ataGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTAt                                                                                          >  1:1502481/1‑140 (MQ=255)                                              ataGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTAt                                                                                          >  1:269045/1‑140 (MQ=255)                                                 gAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGa                                                                                       >  1:264887/1‑140 (MQ=255)                                                    aTGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAgg                                                                                    >  1:620001/1‑140 (MQ=255)                                                    aTGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAgg                                                                                    >  1:751916/1‑140 (MQ=255)                                                    aTGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAgg                                                                                    >  2:1462039/1‑140 (MQ=255)                                                    aTGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGCTAAAGGTATGGAAgg                                                                                    >  1:650668/1‑140 (MQ=255)                                                     tGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGgc                                                                                   >  2:447171/1‑140 (MQ=255)                                                      gCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGgcg                                                                                  <  1:373192/140‑1 (MQ=255)                                                      gCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGgcg                                                                                  >  2:345633/1‑140 (MQ=255)                                                      gCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGgcg                                                                                  <  2:683371/140‑1 (MQ=255)                                                        tAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGca                                                                                >  2:1562031/1‑140 (MQ=255)                                                          aGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGcaat                                                                              >  1:130062/1‑140 (MQ=255)                                                                 aTGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGcc                                                                       >  2:1496923/1‑140 (MQ=255)                                                                 aTGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGcc                                                                       >  2:913886/1‑140 (MQ=255)                                                                  tGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCa                                                                      >  2:1536855/1‑140 (MQ=255)                                                                      ttATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGAc                                                                  >  2:919459/1‑140 (MQ=255)                                                                      ttATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGAc                                                                  >  1:1137868/1‑140 (MQ=255)                                                                       tataTGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGAcc                                                                 >  1:27536/1‑140 (MQ=255)                                                                        atatGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCg                                                                <  2:233014/140‑1 (MQ=255)                                                                        atatGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCg                                                                >  1:597878/1‑140 (MQ=255)                                                                        atatGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCg                                                                <  2:269045/140‑1 (MQ=255)                                                                           tGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTaa                                                             >  1:1460858/1‑140 (MQ=255)                                                                           tGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTaa                                                             >  1:637415/1‑140 (MQ=255)                                                                              aaaTTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACtt                                                          >  2:817169/1‑140 (MQ=255)                                                                              aaaTTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACtt                                                          >  1:981826/1‑140 (MQ=255)                                                                               aaTTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTa                                                         <  2:751916/140‑1 (MQ=255)                                                                               aaTTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTa                                                         <  1:463828/140‑1 (MQ=255)                                                                                aTTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTAt                                                        >  1:1087463/1‑140 (MQ=255)                                                                                aTTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTAt                                                        >  1:221808/1‑140 (MQ=255)                                                                                   aGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGAc                                                     >  2:687481/1‑140 (MQ=255)                                                                                   aGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGAc                                                     >  1:1322034/1‑140 (MQ=255)                                                                                     tAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACtt                                                   >  2:1017668/1‑140 (MQ=255)                                                                                      aaaaTTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGG‑‑TGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGa                                                <  1:927197/140‑1 (MQ=255)                                                                                        aaTTATGTTGCTATGTCGGATAGTTACGATGTAGTCATCTAACGAATGCCGCGGCATATGGGTTGGACTGAAGCGTCTGTCCTGGTTGTTAAGGGTATGGAAGGCGCAATCAAGGCCAAGACCGTAACTTATGTCTTTGa                                                <  2:1214023/140‑1 (MQ=25)                                                                                        aaTTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGa                                                <  2:1261007/140‑1 (MQ=255)                                                                                         aTTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGaa                                               <  1:75944/140‑1 (MQ=255)                                                                                          ttATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAAc                                              >  1:932885/1‑140 (MQ=255)                                                                                               ttGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTg                                         >  2:603862/1‑140 (MQ=255)                                                                                               ttGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTg                                         >  1:894126/1‑140 (MQ=255)                                                                                                     tGTCAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGaa                                   >  1:1571081/1‑140 (MQ=255)                                                                                                        cAGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGgc                                <  2:556182/140‑1 (MQ=255)                                                                                                         aGATAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGgcg                               >  1:1057843/1‑140 (MQ=255)                                                                                                           aTAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCt                             >  1:1031029/1‑140 (MQ=255)                                                                                                           aTAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCt                             >  1:1361718/1‑140 (MQ=255)                                                                                                           aTAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCt                             >  1:152324/1‑140 (MQ=255)                                                                                                            tAGTTACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTa                            >  1:286831/1‑140 (MQ=255)                                                                                                               ttACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAgc                         >  1:869902/1‑140 (MQ=255)                                                                                                               ttACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAgc                         >  2:880980/1‑140 (MQ=255)                                                                                                               ttACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAgc                         >  1:165224/1‑140 (MQ=255)                                                                                                               ttACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAgc                         <  2:1460858/140‑1 (MQ=255)                                                                                                                tACGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAgct                        >  1:1271336/1‑140 (MQ=255)                                                                                                                 aCGATTTAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAgctg                       >  1:235778/1‑140 (MQ=255)                                                                                                                     tttAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGa                   <  2:1322034/140‑1 (MQ=255)                                                                                                                      ttAGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGaa                  <  2:57822/140‑1 (MQ=255)                                                                                                                        aGTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAAt                >  2:1008437/1‑140 (MQ=255)                                                                                                                         gTCATCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATg               >  1:250368/1‑140 (MQ=255)                                                                                                                             tCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCa           <  1:913886/140‑1 (MQ=255)                                                                                                                             tCTAACTAATGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGCTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCa           <  2:650668/140‑1 (MQ=255)                                                                                                                               taactaaTGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCaga         <  1:495677/140‑1 (MQ=255)                                                                                                                               taactaaTGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCaga         >  2:1122440/1‑140 (MQ=255)                                                                                                                               taactaaTGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCaga         <  1:772437/140‑1 (MQ=255)                                                                                                                                    aaTGCCGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTg    >  1:1535501/1‑140 (MQ=255)                                                                                                                                      tgccgcGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGt  >  1:1607190/1‑140 (MQ=255)                                                                                                                                         |                                                                                                                                         AATGGTTATCAAAACTCAAAAACACATGTTTATAATCAATGAGTTATAGAAATGCTAAGGGCTAATGAGTTATATGCAAATTAGTAAAATTATGTTGCTATGTCAGATAGTTACGATTTAGTCATCTAACTAATGCTGCGCCATATGGGTTGGACTGAAGCGGCTGACCTGATTGTTAAAGGTATGGAAGGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGT  >  NC_000913/1211281‑1211553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑