| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 842,009 | (GA)4→3 | coding (47‑48/261 nt) | mcbA ← | DUF1471 domain‑containing protein McbA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 842,003 | 0 | G | . | 98.8% | 362.5 / ‑2.7 | 82 | coding (54/261 nt) | mcbA | DUF1471 domain‑containing protein McbA |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (30/51); total (31/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 842,004 | 0 | A | . | 98.8% | 360.6 / ‑2.6 | 82 | coding (53/261 nt) | mcbA | DUF1471 domain‑containing protein McbA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (30/51); minor base C (1/0); total (31/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCGCCTTGTTCGCGCGCTTTTTCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGTGAGAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCAAATGACGCAAAAAATTGA > NC_000913/841865‑842136 || cgcgCCTTGTTCGCGCGCTTTTTCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGTga > 1:1316542/1‑140 (MQ=255) ccTTGTTCGCGCGCTTTTTCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGTgagaga > 2:359631/1‑140 (MQ=255) ttGTTCGCGCGCTTTTTCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGTgagagatt > 1:552441/1‑138 (MQ=255) ttGTTCGCGCGCTTTTTCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGTgagagatt < 1:1373259/140‑3 (MQ=255) ttGTTCGCGCGCTTTTTCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGTgagagatt < 2:841130/140‑3 (MQ=255) ttGTTCGCGCGCTTTTTCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGTgagagatt < 1:25303/140‑3 (MQ=255) cgcgcgCTTTTTCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGTgagagattccgct < 1:727325/140‑8 (MQ=255) cgcgcgCTTTTTCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGTgagagattccgct < 1:319578/140‑8 (MQ=255) cgcTTTTTCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAgg > 1:777555/1‑140 (MQ=255) ttttCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGGTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACgg > 2:1412370/1‑140 (MQ=255) ttCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAGCGGTACCGGCGGGCCGTAGCTGACCGCTGGCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTg < 2:1348892/140‑1 (MQ=255) ttCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTg < 1:1225722/140‑1 (MQ=255) ttCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTg < 2:1448870/140‑1 (MQ=255) ttCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTg < 1:485942/140‑1 (MQ=255) ttCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTg < 2:467999/140‑1 (MQ=255) ttCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTg < 2:60394/140‑1 (MQ=255) ttCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTg < 2:1003399/140‑1 (MQ=255) cTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGc < 1:78717/140‑1 (MQ=255) cTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGc < 1:900007/140‑1 (MQ=255) cTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCAAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGc < 1:1496919/140‑1 (MQ=255) tGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCa < 1:888411/140‑1 (MQ=255) tGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCa < 1:72624/140‑1 (MQ=255) ccAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAAt < 1:1020228/140‑1 (MQ=255) ccAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAAt < 1:357890/140‑1 (MQ=255) ccAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAAt < 1:677556/140‑1 (MQ=255) aGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCa > 2:515782/1‑140 (MQ=255) gTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTTCAGGCTACTCATCGGGTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGAGGCAAGCag > 2:265323/1‑140 (MQ=255) gTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCGTCGGTTGTGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCag < 1:400312/140‑1 (MQ=255) gTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCag < 2:189705/140‑1 (MQ=255) gTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCag < 2:1429444/140‑1 (MQ=255) gTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCag < 1:673266/140‑1 (MQ=255) gTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCag < 1:873433/140‑1 (MQ=255) tttATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCagt > 1:1334907/1‑140 (MQ=255) ttATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCagta < 2:607091/140‑1 (MQ=255) cAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAgg < 2:867058/140‑1 (MQ=255) cAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAgg < 1:203368/140‑1 (MQ=255) aGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGc > 2:739470/1‑140 (MQ=255) aGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGGAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGGGGCAATCAGTAGTGTGAGGc > 1:1348537/1‑140 (MQ=255) cTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACtttt < 2:1045951/140‑1 (MQ=255) ttAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACttttt > 1:338387/1‑140 (MQ=255) aGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCa > 1:449941/1‑140 (MQ=255) gTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATa < 2:1316542/140‑1 (MQ=255) gATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCAT‑‑GAGAGATTCCGCTCAGGACGGTGGCTATCAGTAGTGTGAGGCACTTTTTCATAATGa > 1:430284/1‑140 (MQ=255) aTGCGCCAGTTGCCGAAACGGTACCGGCGGGGCGTAGCTGACCGCTGTCCAGGTAACTCCTCGGTAGCGCGGCGTAAGCCGTGAG‑G‑GATTCCGCTCAGGGCGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGAc > 2:1101801/1‑140 (MQ=255) aTGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGAc < 1:628145/140‑1 (MQ=255) tGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACa < 1:265323/140‑1 (MQ=255) tGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACa < 1:1397093/140‑1 (MQ=255) ccAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGGGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATccc > 2:327550/1‑139 (MQ=255) ccAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGGGGCAATCAGTAGTGGGAGGCACTTTTTCATAATGACATCCt > 2:600658/1‑140 (MQ=255) gTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCAt < 2:498485/140‑1 (MQ=255) ccGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAAt < 2:1334907/140‑1 (MQ=255) aaCGGTACCGGGGGGCCGTAGCTGACCGCTGTCCAGGTTTCTCATCGGTTGCGGGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTATTTCATAATGACATCCTCATAAATGCat < 2:1278920/140‑2 (MQ=255) aaCGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACaa < 2:74083/140‑1 (MQ=255) cGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACg > 1:1315755/1‑140 (MQ=255) gTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACggg < 2:1182700/140‑1 (MQ=255) tACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGt > 1:91627/1‑140 (MQ=255) tACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCACAAATACAACGGGt < 2:966716/140‑1 (MQ=255) aCCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTa > 1:1471972/1‑140 (MQ=255) aCCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGT‑GCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAg > 1:315113/1‑140 (MQ=255) ccGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAg < 1:18239/140‑1 (MQ=255) cggcggGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGt < 2:777555/140‑1 (MQ=255) ggcggGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGT‑GCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGc < 2:315113/140‑1 (MQ=255) gcggGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGc > 2:1395612/1‑140 (MQ=255) cggGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGcc < 1:934583/140‑1 (MQ=255) ggCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTg > 2:1168115/1‑140 (MQ=255) gCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGa < 1:1456363/140‑1 (MQ=255) gCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGa < 1:307692/140‑1 (MQ=255) ccGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGAt < 1:1421197/140‑1 (MQ=255) ccGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGAt < 1:1332277/140‑1 (MQ=255) ccGTAGCTGACCGCTGTCAAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGAt < 1:916074/140‑1 (MQ=255) cGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATa < 2:355965/140‑1 (MQ=255) tAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAg < 2:1020926/140‑1 (MQ=255) cTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCC‑‑GCGAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAgtgt > 1:1442731/1‑140 (MQ=255) gACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAg < 2:1171618/140‑1 (MQ=255) aCCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAgg > 2:1280641/1‑140 (MQ=255) aCCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAgg > 1:1474306/1‑140 (MQ=255) ccGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGt < 2:1471972/140‑1 (MQ=255) cGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTc > 1:930331/1‑140 (MQ=255) cAGGTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTgcg < 2:1193340/140‑1 (MQ=255) ggTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGcgcg < 1:714424/140‑1 (MQ=255) gTTACTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGa > 2:1092651/1‑140 (MQ=255) aCTCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGc > 2:138437/1‑140 (MQ=255) tCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCag > 2:272283/1‑56 (MQ=255) tCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCag < 1:272283/56‑1 (MQ=255) tCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCaa > 1:815353/1‑140 (MQ=255) tCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCaa > 1:1449466/1‑140 (MQ=255) tCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCaa > 1:291740/1‑140 (MQ=255) tCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCaa > 2:794281/1‑140 (MQ=255) tCATCGGTTGCGCGGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCaa > 1:702689/1‑140 (MQ=255) cgcgGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCAAATGACGCaaa > 2:1168509/1‑140 (MQ=255) cgGCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCAAATGACGCaaaaa < 2:1431195/140‑1 (MQ=255) gCATAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCAAATGACGCAAAAAAt < 2:552441/140‑1 (MQ=255) tAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCAAATGACGCAAAAAATTGa > 2:173548/1‑140 (MQ=255) tAAGCCGT‑‑GAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCAAATGACGCAAAAAATTGa < 1:515782/140‑1 (MQ=255) || CGCGCCTTGTTCGCGCGCTTTTTCTGCCAGTTTATCCTCCAGATCGCTTAGGTTTGATGCGCCAGTTGCCGAAACGGTACCGGCGGGCCGTAGCTGACCGCTGTCCAGGTTACTCATCGGTTGCGCGGCATAAGCCGTGAGAGAGATTCCGCTCAGGACGGTGGCAATCAGTAGTGTGAGGCACTTTTTCATAATGACATCCTCATAAATACAACGGGTAGTGCCTGATAAGTGTAGGTCGCCTGCGCGATGCAAATGACGCAAAAAATTGA > NC_000913/841865‑842136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |