Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG34.6% 183.9 / 20.5 102T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (17/49);  new base G (35/0);  total (53/49)
Fisher's exact test for biased strand distribution p-value = 1.35e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 107 total aligned reads displayed.

GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568369‑4568641
                                                                                                                                       |                                                                                                                                           
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                                                                                                                                         >  2:515069/1‑140 (MQ=255)
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaa                                                                                                                                         >  2:279884/1‑140 (MQ=255)
   ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa                                                                                                                                      <  1:826898/140‑1 (MQ=255)
     aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                    <  2:109680/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                  <  1:620068/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                  <  1:1578361/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                  <  2:897604/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                  <  2:1582156/140‑1 (MQ=255)
          gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaagcggga                                                                                                                               >  1:1552742/1‑133 (MQ=255)
           aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt                                                                                                                              <  2:1543901/140‑1 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                             <  1:1395633/140‑1 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                             <  1:1065209/140‑1 (MQ=255)
                ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGGGGGCTaacaa                                                                                                                         >  2:926044/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCNTGGCGGCATGGCGGGGAAAAAAAAGGGGCGTaaaaaa                                                                                                                        >  2:1532131/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGATaaaaaa                                                                                                                        >  2:1249185/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATaacaaa                                                                                                                        >  2:777236/1‑140 (MQ=255)
                   aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaaca                                                                                                                      <  2:30502/140‑1 (MQ=255)
                     tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAaaaaacaaa                                                                                                                    >  1:132979/1‑139 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  2:330244/140‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGt                                                                                                             <  1:1459871/140‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCAAAAAAAACAACTCCCTGt                                                                                                             >  1:1476471/1‑140 (MQ=255)
                               tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCCTGTCCg                                                                                                          >  2:627877/1‑140 (MQ=255)
                               tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAACAAAAAACCCCCTGTCCg                                                                                                          >  2:718476/1‑140 (MQ=255)
                                aCCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCgg                                                                                                         <  1:1431238/140‑1 (MQ=255)
                                 ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGGATAAAAAACAACCCCCTTTCCCga                                                                                                        >  1:530726/1‑140 (MQ=255)
                                 ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAGGGCATAAAAAAAAACCCCTTGTCCggg                                                                                                        >  1:1008587/1‑139 (MQ=255)
                                  cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGgag                                                                                                       <  1:440221/140‑1 (MQ=255)
                                    caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGaa                                                                                                     <  1:569491/140‑1 (MQ=255)
                                    caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGaa                                                                                                     >  1:348940/1‑140 (MQ=255)
                                    caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAACAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCCTGTCCGGAGaa                                                                                                     >  2:547802/1‑140 (MQ=255)
                                          tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGCATAACAAAAAAAACCTTGTCCGGAGAA‑ccccca                                                                                              >  1:808265/1‑138 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAAATCCTTGTCCGGAGAA‑CCCCCAC‑g                                                                                           >  1:561910/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACTCCCTGTCCGGAGAA‑CCCCAAC‑g                                                                                           >  1:1196487/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAAACCCCTTTCCGGAGAA‑ACCCCAC‑cgg                                                                                         >  2:1512192/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAAAAACTCCTTGTCCGGAGAA‑CCCCCAC‑ggg                                                                                         >  1:1175871/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAAAAAAAACGAGGCATAAAAAAAAACACCTTGTTCGGAGAA‑ACCCAAC‑ggg                                                                                         >  1:1405142/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAAAAACTCCTTTTTCGGAGAA‑CCCCAAC‑gggg                                                                                        >  2:836222/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGGGGCATAACAAACAACCCCCTGGCCGGAGAA‑CCCCAAC‑gggg                                                                                        >  1:770062/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACCCCCTGTCCGGAGAA‑CCCCCAC‑gggg                                                                                        >  2:1519142/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACAGGCCTAACAAACAACCCCCTGTCCGGGGGA‑CCCCAAC‑gggg                                                                                        >  2:814467/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAAAAGGGCTGAAAAACAACTACTTTTTCGGAGAA‑TCCCAAC‑cggg                                                                                        >  1:353499/1‑140 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAACAAATCCTTGTCCGGAGAA‑CCCCAAC‑ggggg                                                                                       >  1:195801/1‑139 (MQ=255)
                                                 aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGGGGCATAACAAAAAACTCCCTGTCCGGAGAA‑CCCCCAC‑ggggga                                                                                      >  1:349982/1‑138 (MQ=255)
                                                    cTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCCAC‑GGGGgaaaa                                                                                   >  1:135847/1‑139 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACg                                                                                  <  2:1480479/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACg                                                                                  <  2:1172009/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACg                                                                                  <  1:991318/140‑1 (MQ=255)
                                                      ggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAAACCCTTGTACCGGGAA‑CCCCCAC‑GGGGGAAAAGa                                                                                 >  2:68121/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTTAAAAAAAATGGCCTCAAAAACAACTCCCTGTGCCGAGAA‑CCCCAAC‑AGGGAAAAAGaa                                                                                >  2:513745/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGCAAAAAAAAAAACTCCTTGTCCGGAGAA‑ACCCAAC‑GGGGaaaaacaa                                                                                >  1:1441378/1‑136 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAGGGAATAAAAAAAAACTCCCTTTCCGGAGAA‑ACCCCAA‑GGGGAAAACaaa                                                                                >  1:1274344/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGCATAAAAAAAAACTCCTTGTCCGGGGAACCCCCAAC‑GGGG‑AAACGaaa                                                                               >  1:1522306/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCCTGTCCGGAGAA‑CCCCCAC‑GGGGGAAAAGaaa                                                                               >  1:1562438/1‑140 (MQ=255)
                                                            gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCa                                                                           <  2:176888/140‑1 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCaa                                                                          >  1:841442/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAAAAAATCCTTTTCCGGGGGA‑ACCCCCC‑AAGGAAAACGAAAtttca                                                                          >  2:1523688/1‑137 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCCTGTCCGGGGGA‑CCCCCACGGGGGAAAACAAAATCCa                                                                           >  2:1361644/1‑140 (MQ=255)
                                                              tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAAt                                                                         <  2:283065/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAACTGGGAAAACAAAAAACTCCTTGTCCGGGGAA‑CCCCCAC‑GGGGGAAACGAAAATCAAAAcc                                                                      >  2:746540/1‑140 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCATAAAAAACAACTCCCTGTCCGGAGAA‑CCCCCAC‑GGGGGAAACGAAAATccaaaac                                                                      >  2:215512/1‑134 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAACAAAAAACACCCTGTCCCGAGAA‑CCCCCAC‑CGGGGAAAAGAAAATCAATAccc                                                                     >  2:960278/1‑139 (MQ=255)
                                                                            cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGa                                                           <  2:348940/140‑1 (MQ=255)
                                                                             gcagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGAc                                                          <  2:422014/140‑1 (MQ=255)
                                                                              cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAACAAACAACTCCCTGTCCGGAGAA‑CCCCAAC‑GGGGGAAACGAAAATCAAAAACGCCGGGAATGACg                                                         >  2:1248865/1‑140 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACCCCTTGTCCGGAGAA‑CCCCAAC‑GGGGGAAAAGAAAATCAATAACGTCGGGAATGACGaaa                                                      >  2:1056747/1‑140 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  1:777236/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCCAC‑GGGGGAAACGAAAATCAATACCCCCGGTAATGACGaaaag                                                    >  2:164729/1‑138 (MQ=255)
                                                                                       cATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACACGGCAACACAAACAAATCCTTTGCCTGAGAA‑GCCCAAC‑GGGGAAAAACAAATTCAAAACCCGCAGCAACGACCAAAGACAgg                                                >  2:349422/1‑140 (MQ=255)
                                                                                        aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                               <  1:845329/140‑1 (MQ=255)
                                                                                        aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                               <  2:818363/140‑1 (MQ=255)
                                                                                         tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACCTGGCATAACAAACAACTCCTTGTCCGGAGAA‑ACCCCAC‑GGGGAAAAAGAAAATCAATACCGCCGGGAATGACGAAAAGCAgggg                                              >  2:1419938/1‑138 (MQ=255)
                                                                                          aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga                                             <  1:732927/140‑1 (MQ=255)
                                                                                            aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  1:836222/140‑1 (MQ=255)
                                                                                            aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  2:398133/140‑1 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAAAAAAGTGGCATAAAAAACAACACCCTGTCCGGAGAA‑CCCCAAC‑AGGGGAAAAGAAATTTAATACCGCCGGGAATGACGAAAAGCAGGGGAGAAg                                         >  2:1252998/1‑140 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAAAAAACAACTCCTTGTCCGGAGGA‑CCCCCAC‑GGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAAGCAGGGGGGAAg                                         >  2:1227104/1‑140 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                    <  2:239065/140‑1 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                    <  1:718476/140‑1 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAACCCCTTTCCGGGGAA‑CCCCCAC‑GGGGGAAACGAAATTCAAAACCCCCGGGAATGACGAAAAGCAGGggggaaggggaa                                    >  2:1434695/1‑140 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTTTGGAGAA‑CCCCATC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCCTGAGAGAAGGGCAAc                                   <  2:353499/140‑1 (MQ=255)
                                                                                                       cATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag                                <  2:370011/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:1012089/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  2:132979/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:814467/140‑1 (MQ=255)
                                                                                                          cGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACCAGGGGTAACAAACAAATCCCCTTCCCGGGAA‑ACCCCAC‑GGGGGAAAAGAAAATCAAAACCGTCGGGAATGACCAAAAGCAAGAGATGAGGGCAACCAGAcc                             >  2:1129869/1‑139 (MQ=255)
                                                                                                          cGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAACAACTCCCTTTCCGGAGAA‑CCCCAAC‑GGGGGAAACGAAAATCAAAACCCTCGGGAATGACGAAAAGCAGGGGAGAAGGGGAAAGAGAcc                             >  2:745799/1‑139 (MQ=255)
                                                                                                              aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  1:1458871/140‑1 (MQ=255)
                                                                                                                     gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt                  <  2:195801/140‑1 (MQ=255)
                                                                                                                       gTGGCGGCATGGCGGGGAAAAAAAAGTGGCCTAAAAAACAACTCCTTGTCCGGAGAA‑CCCCCAA‑GGGGGAAAAGAAAATCAAAACCGGCGGGAAAGACGAAAAGCAGGGGGGAAGGGCAACGAGACTGCAAAAGTAATGa                >  2:554501/1‑140 (MQ=255)
                                                                                                                        tGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGaa               <  1:513745/140‑1 (MQ=255)
                                                                                                                        tGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGaa               <  1:279884/140‑1 (MQ=255)
                                                                                                                        tGGCGGCATGGCGGGTAAAAAAAAGTGGGATAACAAACAACCCCTTGTCCGGGGAA‑CCCCCAC‑CGGGGAAACGAAAATCAATACCCCCGGGAATGACGAAAAGCAGGGGAGGAGGGGAAAGAGACTGCAAAAGGACTGaa               >  2:833847/1‑140 (MQ=255)
                                                                                                                         ggcggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAt              <  1:156177/140‑1 (MQ=255)
                                                                                                                         ggcggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAt              <  1:215512/140‑1 (MQ=255)
                                                                                                                             gcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCAAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa          <  2:1230016/140‑1 (MQ=255)
                                                                                                                              cATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCAt         <  2:1552742/140‑1 (MQ=255)
                                                                                                                               aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAT‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg        <  1:916984/140‑1 (MQ=255)
                                                                                                                                 ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:1533847/140‑1 (MQ=255)
                                                                                                                                     ggTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  <  2:770062/140‑1 (MQ=255)
                                                                                                                                     ggTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  <  2:1476471/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                           
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568369‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑