Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,647,076	T→C	intergenic (+339/+98)	flxA → / ← ydfW	Qin prophage; protein FlxA/Qin prophage; uncharacterized protein YdfW

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,647,076	0	T	C	100.0%	284.5 / NA	75	intergenic (+339/+98)	flxA/ydfW	Qin prophage; protein FlxA/Qin prophage; uncharacterized protein YdfW
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (38/37);  total (38/37)

TTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAG  >  NC_000913/1646942‑1647208                                                                                                                                       |                                                                                                                                     tttGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAAc                                                                                                                                 <  2:650081/140‑1 (MQ=255)          aCAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACaa                                                                                                                        >  2:546758/1‑140 (MQ=255)           cAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACaaa                                                                                                                       <  2:389421/140‑1 (MQ=255)            aGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAac                                                                                                                      >  1:819330/1‑140 (MQ=255)             gTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAacc                                                                                                                     >  2:281187/1‑140 (MQ=255)              tCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAaccc                                                                                                                    >  2:971025/1‑139 (MQ=255)              tCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAacca                                                                                                                    >  2:912701/1‑140 (MQ=255)              tCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAacca                                                                                                                    >  1:1939/1‑140 (MQ=255)              tCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAacca                                                                                                                    >  2:306239/1‑140 (MQ=255)              tCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAacca                                                                                                                    >  2:28723/1‑140 (MQ=255)               ccACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAaccac                                                                                                                   >  1:921105/1‑140 (MQ=255)                  caAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCg                                                                                                                >  1:557635/1‑140 (MQ=255)                        tGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATg                                                                                                          <  2:151525/140‑1 (MQ=255)                        tGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATg                                                                                                          <  2:223322/140‑1 (MQ=255)                        tGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATg                                                                                                          <  2:524711/140‑1 (MQ=255)                                   gCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGaaa                                                                                               <  2:989103/140‑1 (MQ=255)                                     ttcttGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAcg                                                                                             <  1:282882/140‑1 (MQ=255)                                       cttGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAcgcg                                                                                           <  1:251096/140‑1 (MQ=255)                                        ttGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGa                                                                                          <  1:666765/140‑1 (MQ=255)                                        ttGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGa                                                                                          >  1:991100/1‑140 (MQ=255)                                        ttGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATCAACACCAGAAACGCGa                                                                                          <  2:785251/140‑1 (MQ=255)                                            tctTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTa                                                                                      <  1:787258/140‑1 (MQ=255)                                            tctTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTa                                                                                      <  2:802821/140‑1 (MQ=255)                                            tctTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTa                                                                                      <  1:912701/140‑1 (MQ=255)                                            tctTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTa                                                                                      <  1:86559/140‑1 (MQ=255)                                                aGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa                                                                                  <  2:23279/140‑1 (MQ=255)                                                 gCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAAt                                                                                 <  2:857600/140‑1 (MQ=255)                                                  cGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAGCTCCAGAAACGCGACTTAAGAATc                                                                                <  2:471036/140‑1 (MQ=255)                                                  cGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATc                                                                                <  2:819330/140‑1 (MQ=255)                                                  cGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATc                                                                                <  2:390458/140‑1 (MQ=255)                                                      cATTAGCATAGGCTATTTACCATAGCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc                                                                            <  2:126642/140‑1 (MQ=255)                                                      cATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc                                                                            <  2:1939/140‑1 (MQ=255)                                                      cATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc                                                                            <  1:37680/140‑1 (MQ=255)                                                       aTTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAccc                                                                           >  1:803371/1‑140 (MQ=255)                                                           gCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATg                                                                       <  2:593175/140‑1 (MQ=255)                                                             aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATTTCCCCGGCAAAACAAGTAACAAACCTCCCGAAAATGAACCCCAGATACGCGACTTAAGAATCTTCCCTATGaa                                                                     <  2:847466/140‑1 (MQ=255)                                                             aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGaa                                                                     <  1:742761/140‑1 (MQ=255)                                                             aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGaa                                                                     <  2:557635/140‑1 (MQ=255)                                                                ggCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATgg                                                                  <  1:443594/140‑1 (MQ=255)                                                                 gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa                                                                 >  2:519210/1‑140 (MQ=255)                                                                     tttACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATg                                                             >  1:698425/1‑140 (MQ=255)                                                                      ttACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc                                                            >  1:697471/1‑140 (MQ=255)                                                                       tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCa                                                           <  1:837916/140‑1 (MQ=255)                                                                       tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCa                                                           <  1:130275/140‑1 (MQ=255)                                                                          cATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTc                                                        >  2:240433/1‑140 (MQ=255)                                                                           aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa                                                       >  1:569538/1‑140 (MQ=255)                                                                            tAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCaa                                                      <  2:758660/140‑1 (MQ=255)                                                                             aaCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAc                                                     <  2:734193/140‑1 (MQ=255)                                                                               cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg                                                   >  1:674521/1‑140 (MQ=255)                                                                               cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg                                                   >  2:473161/1‑140 (MQ=255)                                                                               cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg                                                   >  2:525385/1‑140 (MQ=255)                                                                               cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg                                                   >  2:24338/1‑140 (MQ=255)                                                                               cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg                                                   >  2:855522/1‑140 (MQ=255)                                                                                  cTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAAt                                                >  2:811795/1‑140 (MQ=255)                                                                                  cTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAAt                                                >  1:489213/1‑140 (MQ=255)                                                                                   tCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATc                                               >  1:199840/1‑140 (MQ=255)                                                                                   tCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATc                                               >  2:4904/1‑140 (MQ=255)                                                                                    cATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCg                                              >  2:711779/1‑140 (MQ=255)                                                                                       tACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATc                                           <  1:855522/140‑1 (MQ=255)                                                                                              aCCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGttt                                    >  2:562211/1‑140 (MQ=255)                                                                                              aCCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGttt                                    >  1:181655/1‑140 (MQ=255)                                                                                                 gCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCaa                                 >  2:247473/1‑140 (MQ=255)                                                                                                  cccAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAAt                                >  2:809148/1‑140 (MQ=255)                                                                                                       actgactCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtttt                           <  1:102676/140‑1 (MQ=255)                                                                                                          gactCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTa                        >  2:834695/1‑140 (MQ=255)                                                                                                           actCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTAt                       <  2:222981/140‑1 (MQ=255)                                                                                                           actCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTAt                       <  1:834695/140‑1 (MQ=255)                                                                                                            ctCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATc                      >  1:617091/1‑140 (MQ=255)                                                                                                                 cgcgTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGAt                 >  1:554919/1‑140 (MQ=255)                                                                                                                 cgcgTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGAt                 <  2:199840/140‑1 (MQ=255)                                                                                                                 cgcgTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGAt                 <  2:698425/140‑1 (MQ=255)                                                                                                                     tttCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAgg             <  1:539419/140‑1 (MQ=255)                                                                                                                                tCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAg  >  1:967952/1‑140 (MQ=255)                                                                                                                                tCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAg  >  2:728806/1‑140 (MQ=255)                                                                                                                                tCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAg  >  2:919242/1‑140 (MQ=255)                                                                                                                                tCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAg  >  1:161552/1‑140 (MQ=255)                                                                                                                                       |                                                                                                                                     TTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAG  >  NC_000913/1646942‑1647208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑