Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,996,027	T→C	pseudogene (334/399 nt)	ygeO ←	putative uncharacterized protein YgeO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,996,027	0	T	C	100.0%	301.4 / NA	80	pseudogene (334/399 nt)	ygeO	putative uncharacterized protein YgeO
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (23/57);  total (23/57)

TTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGTAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTTATATAGGGTAACAACGTTGAAAAACCA  >  NC_000913/2995891‑2996163                                                                                                                                          |                                                                                                                                         ttGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAAt                                                                                                                                       >  2:450645/1‑140 (MQ=255) ttGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAAt                                                                                                                                       >  2:407166/1‑140 (MQ=255)    cGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATtct                                                                                                                                    <  2:608631/140‑1 (MQ=255)    cGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATtct                                                                                                                                    <  1:852547/140‑1 (MQ=255)      gtggtTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATtctct                                                                                                                                  >  1:512050/1‑140 (MQ=255)       tggtTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATtctctc                                                                                                                                 <  1:453/140‑1 (MQ=255)          tttCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTaa                                                                                                                              <  1:727555/140‑1 (MQ=255)           ttCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTaaa                                                                                                                             >  1:524888/1‑140 (MQ=255)            tCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTaaaa                                                                                                                            <  2:69186/140‑1 (MQ=255)                 aagGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGtt                                                                                                                       <  1:779669/140‑1 (MQ=255)                   ggATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGa                                                                                                                     >  2:664595/1‑140 (MQ=255)                   ggATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGa                                                                                                                     >  2:632799/1‑140 (MQ=255)                   ggATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGa                                                                                                                     >  1:939288/1‑140 (MQ=255)                    gATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGAt                                                                                                                    >  1:225751/1‑140 (MQ=255)                       tttttCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTATTTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTT‑ATGCa                                                                                                                 <  1:248078/140‑1 (MQ=255)                       tttttCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCa                                                                                                                 <  1:10361/140‑1 (MQ=255)                         tttCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAg                                                                                                               <  2:613125/140‑1 (MQ=255)                             tttAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGt                                                                                                           <  1:247854/140‑1 (MQ=255)                             tttAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGt                                                                                                           <  2:940527/140‑1 (MQ=255)                               tAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTaa                                                                                                         <  2:1008137/140‑1 (MQ=255)                                 agagAAACTATTTCTTTCAATCCATCAGAAATTTTTNNNNNAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACg                                                                                                       <  2:457026/140‑1 (MQ=255)                                 agagAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACg                                                                                                       <  1:1030838/140‑1 (MQ=255)                                 agagAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACg                                                                                                       <  1:974196/140‑1 (MQ=255)                                 agagAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACg                                                                                                       <  2:523559/140‑1 (MQ=255)                                  gagaAACTATTTCTTTCAATCTATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACgg                                                                                                      <  1:984212/140‑1 (MQ=255)                                  gagaAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACgg                                                                                                      <  2:64819/140‑1 (MQ=255)                                  gagaAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACgg                                                                                                      <  1:460230/140‑1 (MQ=255)                                  gagaAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACgg                                                                                                      <  1:428113/140‑1 (MQ=255)                                    gaAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCg                                                                                                    <  1:826855/140‑1 (MQ=255)                                     aaaCTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGa                                                                                                   >  2:541518/1‑140 (MQ=255)                                     aaaCTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGa                                                                                                   <  2:1027589/140‑1 (MQ=255)                                      aaCTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGAt                                                                                                  <  1:345373/140‑1 (MQ=255)                                      aaCTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGAATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGAt                                                                                                  <  2:1018346/140‑1 (MQ=255)                                           tttctttcAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTAt                                                                                             <  2:509697/140‑1 (MQ=255)                                           tttctttcAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTAt                                                                                             <  1:407166/140‑1 (MQ=255)                                             tctttcAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTAtgt                                                                                           >  1:343353/1‑140 (MQ=255)                                                ttcAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGt                                                                                        >  1:102796/1‑140 (MQ=255)                                                     tCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTcaaca                                                                                   >  2:937933/1‑140 (MQ=255)                                                     tCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTcaaca                                                                                   >  2:236976/1‑140 (MQ=255)                                                        aTCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACaaaa                                                                                >  2:224009/1‑140 (MQ=255)                                                        aTCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACaaaa                                                                                >  2:402793/1‑140 (MQ=255)                                                         tCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAAt                                                                               <  2:647301/140‑1 (MQ=255)                                                            gAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑‑TTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAgg                                                                           <  2:588562/140‑1 (MQ=255)                                                                  tttCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAaata                                                                      <  1:54192/140‑1 (MQ=255)                                                                  ttacTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAaata                                                                      <  2:637676/137‑1 (MQ=255)                                                                   ttCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAaataa                                                                     >  1:959909/1‑140 (MQ=255)                                                                             cacaACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAAtaaattaaat                                                           <  2:268389/140‑1 (MQ=255)                                                                             cacaACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAAtaaattaaat                                                           <  2:887418/140‑1 (MQ=255)                                                                                 acacCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGtt                                                       <  2:595983/140‑1 (MQ=255)                                                                                 acacCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGtt                                                       <  1:632799/140‑1 (MQ=255)                                                                                  cacCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTtg                                                      <  2:301067/140‑1 (MQ=255)                                                                                  cacCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTtg                                                      <  2:416906/140‑1 (MQ=255)                                                                                  cacCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTtg                                                      <  1:62937/140‑1 (MQ=255)                                                                                       tttGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCa                                                 <  2:524888/140‑1 (MQ=255)                                                                                       tttGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCa                                                 >  1:358795/1‑140 (MQ=255)                                                                                       tttGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCa                                                 <  2:631953/140‑1 (MQ=255)                                                                                       tttGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCa                                                 >  2:943048/1‑140 (MQ=255)                                                                                                   tttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgtt                                     >  2:264616/1‑140 (MQ=255)                                                                                                    ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  2:512050/140‑1 (MQ=255)                                                                                                    ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  1:647972/140‑1 (MQ=255)                                                                                                    ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  2:551188/140‑1 (MQ=255)                                                                                                    ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  2:755248/140‑1 (MQ=255)                                                                                                    ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  2:939288/140‑1 (MQ=255)                                                                                                    ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  1:1036605/140‑1 (MQ=255)                                                                                                    ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  1:937933/140‑1 (MQ=255)                                                                                                    ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  1:516727/140‑1 (MQ=255)                                                                                                    ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAAACGTTGCTGCATTGCCAATGgttg                                    <  2:726575/140‑1 (MQ=255)                                                                                                    ttATCAAGCTCATCTCTA‑TCTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  1:775354/140‑1 (MQ=255)                                                                                                         aaGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGcc                               <  2:343353/140‑1 (MQ=255)                                                                                                         aaGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGcc                               <  1:285914/140‑1 (MQ=255)                                                                                                         aaGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGcc                               <  2:297157/140‑1 (MQ=255)                                                                                                         aaGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGcc                               <  1:664595/140‑1 (MQ=255)                                                                                                         aaGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGcc                               <  1:920268/140‑1 (MQ=255)                                                                                                          aGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCt                              >  2:519544/1‑140 (MQ=255)                                                                                                            cTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTGTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTta                            <  1:31892/140‑1 (MQ=255)                                                                                                            cTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGGTGTTGCCTta                            >  2:233185/1‑140 (MQ=255)                                                                                                              cATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTtata                          <  1:530216/140‑1 (MQ=255)                                                                                                               aTCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTtatat                         >  2:873396/1‑140 (MQ=255)                                                                                                               aTCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTtatat                         >  1:763329/1‑140 (MQ=255)                                                                                                                     a‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTTATATAGGGTa                   <  2:959909/140‑1 (MQ=255)                                                                                                                                       aTGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTTATATAGGGTAACAACGTTGAAAAACca  <  2:358795/140‑1 (MQ=255)                                                                                                                                          |                                                                                                                                         TTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGTAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTTATATAGGGTAACAACGTTGAAAAACCA  >  NC_000913/2995891‑2996163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑