BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,569,452	A→G	pseudogene (455/921 nt)	rpnD →	truncated recombination‑promoting nuclease‑like protein RpnD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,569,452	0	A	G	100.0%	521.5 / NA	136	pseudogene (455/921 nt)	rpnD	truncated recombination‑promoting nuclease‑like protein RpnD
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (73/63); total (73/63)

Only 100 of 141 total aligned reads displayed.

TATAGAGCATGATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAACGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGGT  >  NC_000913/4569315‑4569587

tataGAGCATGATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGcg                                                                                                                                       >  2:456020/1‑140 (MQ=255)

tataGAGCATGATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGcg                                                                                                                                       >  1:710201/1‑140 (MQ=255)

     agCATGATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCcgcg                                                                                                                                  >  1:108067/1‑140 (MQ=255)

       cATGATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGtt                                                                                                                                >  1:1107135/1‑140 (MQ=255)

       cATGATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGtt                                                                                                                                >  1:88301/1‑140 (MQ=255)

         tGATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGTCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTcc                                                                                                                              <  2:860935/140‑1 (MQ=255)

          gATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTccc                                                                                                                             >  2:54683/1‑140 (MQ=255)

          gATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTccc                                                                                                                             >  2:1141450/1‑140 (MQ=255)

          gATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTccc                                                                                                                             >  1:913008/1‑140 (MQ=255)

          gATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTccc                                                                                                                             >  1:1162457/1‑140 (MQ=255)

          gATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTccc                                                                                                                             >  1:1193935/1‑140 (MQ=255)

           aTAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCg                                                                                                                            <  2:1327936/140‑1 (MQ=255)

           aTAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCg                                                                                                                            >  1:1044624/1‑140 (MQ=255)

            tAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGc                                                                                                                           <  1:763366/140‑1 (MQ=255)

              aaCGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtg                                                                                                                         <  2:1157913/140‑1 (MQ=255)

                cGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtggt                                                                                                                       <  2:861047/140‑1 (MQ=255)

                cGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtggt                                                                                                                       <  1:304242/140‑1 (MQ=255)

                 gCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtggtg                                                                                                                      >  1:650085/1‑140 (MQ=255)

                 gCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtggtg                                                                                                                      <  2:1204704/140‑1 (MQ=255)

                       cGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGtt                                                                                                                <  2:1229313/140‑1 (MQ=255)

                                 ggTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGc                                                                                                      <  2:1193935/140‑1 (MQ=255)

                                 ggTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGc                                                                                                      <  1:587692/140‑1 (MQ=255)

                                 ggTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGc                                                                                                      >  2:437619/1‑140 (MQ=255)

                                 ggTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGc                                                                                                      <  2:1170216/140‑1 (MQ=255)

                                   tCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCa                                                                                                    <  2:631360/140‑1 (MQ=255)

                                    cATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAg                                                                                                   >  2:683918/1‑140 (MQ=255)

                                       cccGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAgacg                                                                                                >  1:400718/1‑140 (MQ=255)

                                        ccGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAgacga                                                                                               <  1:1135439/140‑1 (MQ=255)

                                                 ttttATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATtgt                                                                                      >  1:831599/1‑140 (MQ=255)

                                                 ttttATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATtgt                                                                                      >  1:639420/1‑140 (MQ=255)

                                                  tttATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATtgtg                                                                                     <  1:1261376/140‑1 (MQ=255)

                                                     aTCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTgcag                                                                                  <  2:536229/140‑1 (MQ=255)

                                                          ggTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCg                                                                             <  1:181105/140‑1 (MQ=255)

                                                          ggTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCg                                                                             <  1:1122881/140‑1 (MQ=255)

                                                           gTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGc                                                                            >  1:117741/1‑140 (MQ=255)

                                                               ccGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGGCTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCagag                                                                        <  2:904676/140‑1 (MQ=255)

                                                                  tAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCg                                                                     <  1:437619/140‑1 (MQ=255)

                                                                   aGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGc                                                                    <  2:270630/140‑1 (MQ=255)

                                                                    gTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGcc                                                                   <  2:910824/140‑1 (MQ=255)

                                                                    gTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGcc                                                                   >  1:1151423/1‑140 (MQ=255)

                                                                      ccTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCt                                                                 >  1:612073/1‑140 (MQ=255)

                                                                        ttACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGGGATTGTGCAGCATCGCAGAGTCGCCCTGt                                                               >  1:1170927/1‑140 (MQ=255)

                                                                         tACCCCTGGTCCCTGTACTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGtt                                                              >  1:1418781/1‑140 (MQ=255)

                                                                          aCCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTg                                                             >  1:1001922/1‑140 (MQ=255)

                                                                          aCCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTg                                                             >  1:1007077/1‑140 (MQ=255)

                                                                              cTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGt                                                         <  1:992145/140‑1 (MQ=255)

                                                                              cTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGt                                                         <  2:831599/140‑1 (MQ=255)

                                                                              cTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGt                                                         <  1:260338/140‑1 (MQ=255)

                                                                              cTGGTCCCTGTGCGGGCTGGACGAATTTGCCGACCCGTCTACCGCTCGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGt                                                         <  2:1044624/140‑1 (MQ=255)

                                                                               tGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGtt                                                        <  1:456020/140‑1 (MQ=255)

                                                                                 gTCCCTGTGCTGGCTGGACGAATTTGTCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGa                                                      >  2:172248/1‑140 (MQ=255)

                                                                                 gTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGa                                                      >  2:1493346/1‑140 (MQ=255)

                                                                                 gTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGa                                                      >  2:1471532/1‑140 (MQ=255)

                                                                                 gTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGa                                                      >  1:102932/1‑140 (MQ=255)

                                                                                 gTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGa                                                      >  1:48313/1‑140 (MQ=255)

                                                                                   cccTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCTCTGTTGGAGTTGATc                                                    >  1:712225/1‑140 (MQ=255)

                                                                                    ccTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATcc                                                   >  1:1360683/1‑140 (MQ=255)

                                                                                     cTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCa                                                  >  2:1389682/1‑140 (MQ=255)

                                                                                      tgtgCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCaa                                                 >  1:425307/1‑140 (MQ=255)

                                                                                      tgtgCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCaa                                                 >  1:1268145/1‑140 (MQ=255)

                                                                                      tgtgCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCaa                                                 >  2:347070/1‑140 (MQ=255)

                                                                                      tgtgCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCaa                                                 >  2:1422574/1‑140 (MQ=255)

                                                                                      tgtgCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCaa                                                 >  2:78980/1‑140 (MQ=255)

                                                                                        tgCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCaaaa                                               <  2:639420/140‑1 (MQ=255)

                                                                                            ggctggACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCat                                           >  2:654505/1‑140 (MQ=255)

                                                                                               tggACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGGTACTGTCGTGCCAGACGCCGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATAtt                                        >  2:831764/1‑140 (MQ=255)

                                                                                                 gACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCg                                      <  2:466058/140‑1 (MQ=255)

                                                                                                  aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGc                                     >  2:1473384/1‑140 (MQ=255)

                                                                                                  aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGc                                     >  2:166073/1‑140 (MQ=255)

                                                                                                  aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGc                                     >  2:1106549/1‑140 (MQ=255)

                                                                                                  aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGc                                     >  2:1012008/1‑140 (MQ=255)

                                                                                                  aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGc                                     >  1:637481/1‑140 (MQ=255)

                                                                                                   cGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGcc                                    <  1:858760/140‑1 (MQ=255)

                                                                                                      ttttGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAgc                                 <  2:982071/139‑1 (MQ=255)

                                                                                                       tttGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAgcg                                <  1:858762/140‑1 (MQ=255)

                                                                                                       tttGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAgcg                                <  1:287251/140‑1 (MQ=255)

                                                                                                       tttGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAgcg                                <  1:1336696/140‑1 (MQ=255)

                                                                                                           ccgacccgacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGAt                            <  2:108067/140‑1 (MQ=255)

                                                                                                           ccgacccgacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGAt                            <  1:101423/140‑1 (MQ=255)

                                                                                                           ccgacccgacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGAt                            >  1:200431/1‑140 (MQ=255)

                                                                                                           ccgacccgacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGAt                            <  1:54683/140‑1 (MQ=255)

                                                                                                                ccgacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGAt                       <  2:536530/140‑1 (MQ=255)

                                                                                                                ccgacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGAt                       <  1:1258542/140‑1 (MQ=255)

                                                                                                                ccgacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGAt                       <  2:876247/140‑1 (MQ=255)

                                                                                                                     tACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGc                  <  2:1229873/140‑1 (MQ=255)

                                                                                                                      aCCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCt                 <  2:982168/140‑1 (MQ=255)

                                                                                                                      aCCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCt                 <  1:842210/140‑1 (MQ=255)

                                                                                                                          cACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATc             >  2:385789/1‑140 (MQ=255)

                                                                                                                          cACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATc             >  2:291630/1‑140 (MQ=255)

                                                                                                                          cACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATc             >  2:549222/1‑140 (MQ=255)

                                                                                                                           aCGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCg            <  2:769398/140‑1 (MQ=255)

                                                                                                                            cGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGa           <  2:342241/140‑1 (MQ=255)

                                                                                                                             ggAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGAt          <  2:710201/140‑1 (MQ=255)

                                                                                                                              gAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATc         <  2:1001922/140‑1 (MQ=255)

                                                                                                                                  cTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACt     <  2:1418781/140‑1 (MQ=255)

                                                                                                                                  cTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACt     <  1:1202971/140‑1 (MQ=255)

                                                                                                                                  cTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACt     >  2:207930/1‑140 (MQ=255)

                                                                                                                                    ttATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTATTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTgg   <  2:18954/140‑1 (MQ=255)

                                                                                                                                     tataGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGgt  >  2:778851/1‑140 (MQ=255)

                                                                                                                                     tataGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGACCTGATGGGGCTTATCGATCAACTGgt  <  2:1268145/140‑1 (MQ=255)

TATAGAGCATGATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAACGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGGT  >  NC_000913/4569315‑4569587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`